BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0148.p (292 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2006 [E] COG0747 ABC-type dipeptide transport system, peripla... 351 1e-96 RSc2870 [E] COG0747 ABC-type dipeptide transport system, peripla... 311 8e-85 RSc0044 [E] COG0747 ABC-type dipeptide transport system, peripla... 261 1e-69 AGpA361 [E] COG0747 ABC-type dipeptide transport system, peripla... 211 1e-54 RSc1886 [E] COG0747 ABC-type dipeptide transport system, peripla... 209 7e-54 >RSc2006 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Rso Ralstonia solanacearum Length = 528 Score = 351 bits (901), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 170/293 (58%), Positives = 220/293 (75%), Gaps = 2/293 (0%) Query: 1 LLAGEVDAIDSVPPADVPKLKTNPKFSLVQRTSWRTIFWTLDQSRDKTPDITDKSGKPLD 60 LLAG+VD +++VP ADVP+++ N F L Q+ SWRT+FW +DQSRD +P ITD++GKPL Sbjct: 237 LLAGDVDVVEAVPAADVPRIRQNKAFHLEQQVSWRTLFWQMDQSRDASPFITDRAGKPLA 296 Query: 61 KNPLKDIRVRQAISKAINRQALTERTLEGLGTPASNIVAPGILGYADNLKVEKYDPEGAK 120 KNP KD RVR+A++ AINR A+ R LEG G AS+IV+P I G+ + YDPEGAK Sbjct: 297 KNPFKDRRVREAVALAINRDAIVTRVLEGQGVVASSIVSPQIFGHPGGKPIP-YDPEGAK 355 Query: 121 KLLAAAGYPNGFALTLHGPNNRYINDERVVQTVAQFLSRIGIQTKVETFPLSVYFGKARN 180 KLLA AGYP+GF LTLH NNRY+ND +V QT AQ L+R+GIQTKVET P++ YF +AR Sbjct: 356 KLLAQAGYPDGFGLTLHATNNRYLNDAQVAQTTAQLLTRVGIQTKVETLPVAAYFSRARQ 415 Query: 181 GDFSVALLGWGTLAGDFGLRTLVGTTDASTGWGSWNWGKYSNPQVDKLVQSSLGSVDEKQ 240 G+FS +LGWG++A D LR+++GT + TG+G+WNWG+YSNP++DKLVQ+SL +V Q Sbjct: 416 GEFSFMMLGWGSVAADVALRSILGTPNPQTGYGTWNWGRYSNPELDKLVQASLSTVSGDQ 475 Query: 241 RQE-FAKQAATVALNDYAVIPLHHQYATWAVRKGLKYTPRIDEFTFAHQFHPQ 292 E AK AA A NDYA+I HHQ ATWA+RKG++Y R DE++ AH F Q Sbjct: 476 AHEQAAKAAARFAQNDYAIIASHHQLATWAMRKGIRYEARTDEWSLAHLFTRQ 528 >RSc2870 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Rso Ralstonia solanacearum Length = 509 Score = 311 bits (798), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 144/294 (48%), Positives = 199/294 (67%), Gaps = 2/294 (0%) Query: 1 LLAGEVDAIDSVPPADVPKLKTNPKFSLVQRTSWRTIFWTLDQSRDKTPDITDKSGKPLD 60 LL+G+V AI++VP D+ +++ + + + S R I+ D RD TPD+T K GKPL Sbjct: 216 LLSGDVQAIENVPTPDLARVRGDASLNFFSKISHRVIYLYTDDKRDPTPDVTGKDGKPLA 275 Query: 61 KNPLKDIRVRQAISKAINRQALTERTLEGLGTPASNIVAPGILGYADNLKVEKYDPEGAK 120 KNPLKD RVR+A+S INRQ + +R +EGL P N+V P + GY NLK KYDPEGAK Sbjct: 276 KNPLKDPRVRRAMSMTINRQGIKDRIMEGLAEPTDNLVPPQLFGYNPNLKTLKYDPEGAK 335 Query: 121 KLLAAAGYPNGFALTLHGPNNRYINDERVVQTVAQFLSRIGIQTKVETFPLSVYFGKARN 180 KLLA AGYP+GF +TLH PNNRY+NDE++ QT+AQ L+RIGI TKVE P++ + K+ Sbjct: 336 KLLAEAGYPDGFGITLHTPNNRYVNDEKIAQTIAQNLTRIGIVTKVEGMPMATFAAKSIR 395 Query: 181 GDFSVALLGWGTLAGDFG--LRTLVGTTDASTGWGSWNWGKYSNPQVDKLVQSSLGSVDE 238 ++S L+GWG G+ LR LV DA G+G+ NWG+Y NP++D ++ +L ++D+ Sbjct: 396 HEYSFGLVGWGAQTGEVSSPLRALVACEDARKGYGTVNWGQYCNPKMDAVLDKALYTMDD 455 Query: 239 KQRQEFAKQAATVALNDYAVIPLHHQYATWAVRKGLKYTPRIDEFTFAHQFHPQ 292 K+R ++A + ++D +IP+H Q TWA RKG YTPR DE T+A F PQ Sbjct: 456 KERSRLLQEATAIVVDDGGIIPVHFQVTTWAARKGFTYTPRTDERTYAQGFMPQ 509 >RSc0044 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Rso Ralstonia solanacearum Length = 530 Score = 261 bits (668), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 122/290 (42%), Positives = 184/290 (63%), Gaps = 2/290 (0%) Query: 1 LLAGEVDAIDSVPPADVPKLKTNPKFSLVQRTSWRTIFWTLDQSRDKTPDITDKSGKPLD 60 LLAG+V I+SVPP D+ +L NP S+ + ++R ++ +D +R+ +P +TDK+G+PL Sbjct: 238 LLAGDVQVIESVPPPDIKRLAANPAVSVFKMPAFRLMYLHMDSAREVSPFVTDKAGRPLA 297 Query: 61 KNPLKDIRVRQAISKAINRQALTERTLEGLGTPASNIVAPGILGYADNLKVEKYDPEGAK 120 KNPLKD+RVRQAIS AI+RQA+ + +EG P ++ + G+ LK D AK Sbjct: 298 KNPLKDVRVRQAISLAISRQAIADHVMEGAAEPTGQLINSTLFGHVPGLKAPVADVAAAK 357 Query: 121 KLLAAAGYPNGFALTLHGPNNRYINDERVVQTVAQFLSRIGIQTKVETFPLSVYFGKARN 180 LLA AGYP+GF +TLH NNRY+ND RV Q +A L+R+GI T+VET P + +F +A Sbjct: 358 TLLAQAGYPDGFGITLHATNNRYVNDHRVAQAIASMLTRVGIATRVETMPSATFFMRANK 417 Query: 181 GDFSVALLGWGTLAGDFG--LRTLVGTTDASTGWGSWNWGKYSNPQVDKLVQSSLGSVDE 238 +FS L GWG G+ L+ L+ T D + GWG+ N G+YS+P +D + +L ++D+ Sbjct: 418 LEFSFLLAGWGADTGEASSCLKALLATYDPARGWGASNRGRYSSPALDAKLAEALQTLDD 477 Query: 239 KQRQEFAKQAATVALNDYAVIPLHHQYATWAVRKGLKYTPRIDEFTFAHQ 288 +R++ ++A + + + VIPL+ WA RKG P +D+ T A + Sbjct: 478 ARREKLLQEATEIGMREVGVIPLYFNINAWAARKGYTVVPHLDDRTHAFE 527 >AGpA361 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 545 Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 119/288 (41%), Positives = 163/288 (56%), Gaps = 5/288 (1%) Query: 2 LAGEVDAIDSVPPADVPKLKTNPKFSLVQRTSWRTIFWTLDQSRDK-TPDITDKSGKPLD 60 LAG+VD ID+ D+ + KT S V R I+ S D + G+ LD Sbjct: 255 LAGDVDVIDAPAATDIARFKTTANLSFVSTPGLRVIYLAPSTSGDAWKAFVKGPKGEALD 314 Query: 61 KNPLKDIRVRQAISKAINRQALTERTLEGLGTPASNIVAPGILGYADNLKVEKYDPEGAK 120 NPL D RVR A+S+AINR+ + ++ +EG T + + G Y +++ K D GAK Sbjct: 315 NNPLADPRVRNALSEAINREGIVDKIMEGTATASGQWLPKGAFSYTPDIQPPKPDAAGAK 374 Query: 121 KLLAAAGYPNGFALTLHGPNNRYINDERVVQTVAQFLSRIGIQTKVETFPLSVYFGKARN 180 KLLA AGYP+GF LT+H PN+RY N VVQ VAQ +RIG++T VE P + + +R Sbjct: 375 KLLADAGYPDGFQLTVHVPNDRYPNAPAVVQAVAQMWTRIGVKTNVEALPWTTF--SSRK 432 Query: 181 GDFSVALLGWGTLAGDFG--LRTLVGTTDASTGWGSWNWGKYSNPQVDKLVQSSLGSVDE 238 +F++ LLG G D L ++GT D G G+ N YSNP +D LV ++ D+ Sbjct: 433 SEFAMKLLGLGNATYDASSMLVNVLGTVDPKRGLGAANDSGYSNPALDDLVSKAMMIYDD 492 Query: 239 KQRQEFAKQAATVALNDYAVIPLHHQYATWAVRKGLKYTPRIDEFTFA 286 K R+ +A VA+ D A+IPL+ Q W +RKGL Y PRIDE T A Sbjct: 493 KAREAALIEAVKVAITDGAIIPLYQQSNAWVLRKGLNYAPRIDERTLA 540 >RSc1886 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Rso Ralstonia solanacearum Length = 525 Score = 209 bits (531), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 114/290 (39%), Positives = 165/290 (56%), Gaps = 6/290 (2%) Query: 1 LLAGEVDAIDSVPPADVPKLKTNPKFSLVQRTSWRTIFWTLDQSRDKTPD--ITDKSGKP 58 LL+GEVD ID V AD+ +L+ +P + R + L S + P+ +T GKP Sbjct: 230 LLSGEVDVIDKVSVADLARLRQSPGVKVYAYPGLRVML--LQPSFRQGPNEYLTGNDGKP 287 Query: 59 LDKNPLKDIRVRQAISKAINRQALTERTLEGLGTPASNIVAPGILGYADNLKVEKYDPEG 118 L NPL D+RVR+A+S AI+R+A+ +R L+G T A+ + GY +K YDP Sbjct: 288 LPNNPLLDVRVRRALSLAIDRRAIVDRILQGAATVANQWMPADTFGYNPEVKDIAYDPAQ 347 Query: 119 AKKLLAAAGYPNGFALTLHGPNNRYINDERVVQTVAQFLSRIGIQTKVETFPLSVYFGKA 178 A+KLLA AG+ GF L +H PN+RY Q VAQF +RIG++ KVE P SVY +A Sbjct: 348 ARKLLAEAGFAQGFNLVMHVPNDRYPQGPETAQAVAQFWTRIGVKAKVEVVPWSVYASRA 407 Query: 179 RNGDFSVALLGWGTLAGD--FGLRTLVGTTDASTGWGSWNWGKYSNPQVDKLVQSSLGSV 236 D+++++L WG G+ + L ++ T DA G G+ NWG YSN VD + +S Sbjct: 408 NKNDYAMSMLAWGNGTGEASYALVNVLATVDAKKGLGASNWGHYSNQAVDHALDASTEEF 467 Query: 237 DEKQRQEFAKQAATVALNDYAVIPLHHQYATWAVRKGLKYTPRIDEFTFA 286 + ++R + + V +D V+PL+H WA +KGLK TP + T A Sbjct: 468 NTEKRAAILRHSVKVVSDDVGVLPLYHYQNVWAAKKGLKVTPMTSDRTAA 517