BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0119.p         (110 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0190 [R] COG0730 Predicted permeases Rso Ralstonia solanacearum    127   5e-30
PA2847 [R] COG0730 Predicted permeases Pae Pseudomonas aeruginosa      96   2e-20

>RSp0190 [R] COG0730 Predicted permeases Rso Ralstonia solanacearum
          Length = 263

 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 82/110 (74%)

Query: 1   MGLAAGASAGFFSVGGAIVAVPGLVGLFGMTQTAAQGLGLAMVTPGTLVALWTYASAGHV 60
           +G+A+G  +G F+VGG +V VP LV LFGM+QT AQG+ LA+V PG+L+AL TYA AGHV
Sbjct: 153 LGIASGGMSGIFTVGGGLVVVPALVTLFGMSQTRAQGMALALVVPGSLIALATYAHAGHV 212

Query: 61  DWSIGIPLALGGVLSISWGVALAHHLPERRLRMLFCGALIAIAAWMMTHG 110
            W  GIPLALGG+ S+SWGVALAH     RLR++FC  L+  AA M+  G
Sbjct: 213 SWGTGIPLALGGMASVSWGVALAHRFSPMRLRLVFCAVLVGAAAAMLVEG 262


>PA2847 [R] COG0730 Predicted permeases Pae Pseudomonas aeruginosa
          Length = 249

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 57/77 (74%)

Query: 20  AVPGLVGLFGMTQTAAQGLGLAMVTPGTLVALWTYASAGHVDWSIGIPLALGGVLSISWG 79
           A P L  +FG+ Q  AQGL LA+  P T VAL TYA  GHVDW +GIPLALGG+LSISWG
Sbjct: 159 ATPVLTSVFGLAQVVAQGLALALAAPSTAVALGTYAMHGHVDWRMGIPLALGGLLSISWG 218

Query: 80  VALAHHLPERRLRMLFC 96
           V LAH LPER LRM FC
Sbjct: 219 VRLAHALPERSLRMAFC 235