BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0105.p         (216 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VNG0662G [C] COG1845 Heme/copper-type cytochrome/quinol oxidase,...    62   6e-10
alr0952 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ...    62   1e-09
alr2516 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ...    59   8e-09

>VNG0662G [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3
           Hbs Halobacterium sp. NRC-1
          Length = 285

 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 7/187 (3%)

Query: 35  GPRSTTWWGTMGMVLVEGTVFALGVMSYFYLRSQSDQWPDGGIPPDLMWGTL---NTLLM 91
           G  +   WG +G +  E   F  G   YF++R+ +         PD   G+L   NT ++
Sbjct: 97  GGSTALRWGMIGFLGSEIATFGAGFAYYFFIRAGTQWSTAASAIPDGFLGSLVVVNTAIL 156

Query: 92  LLSCVPNWWTNEAAKQFDLRKVRIGLCICMVFSLLFLGGRVGEF----ASLNVKWSDNAY 147
           ++S     + + A ++ +  +    L   +V  ++F+GG+V E+    A      S   +
Sbjct: 157 VVSSFTLHFAHVALRKGNRSRFLALLVSTLVLGVVFIGGQVYEYYEFIAHEGFTLSGGLF 216

Query: 148 GSVTWMLLGLHTTHLITDTYNTLVLTVLFFTGPVEAKRFVDVSENAAYWYFVVISWVAIY 207
            S  + L GLH  H+        ++ V    G   A R   VS  + YW+FV I W+ + 
Sbjct: 217 ESAFFGLTGLHGLHVTMGAVLIGIIMVRGLRGQYSADRHTSVSTVSMYWHFVDIVWIFLV 276

Query: 208 AVIYGGA 214
            V+Y G+
Sbjct: 277 VVLYAGS 283


>alr0952 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3
           Nos Nostoc sp. PCC 7120
          Length = 207

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 10/176 (5%)

Query: 42  WGTMGMVLVEGTVFALGVM-SYFYLRSQSDQWPDGGIPP-DLMWGTLNTLLMLLSCVPNW 99
           +G    ++ EG +F LG+  +Y   RS    WP  G P  +L+   +NT+ ++ S     
Sbjct: 34  FGLFVFLVAEGMIF-LGLFGAYLAFRSTLPVWPPAGTPELELLLPGVNTVNLIASSFVMH 92

Query: 100 WTNEAAKQFDLRKVRIGLCICMVFSLLFLGGRVGEFASLNVKWSDNAYGSVTWMLLGLHT 159
             + A K+ D + +R+ L I      +FL G+V E+  L    + N + S  ++L G H 
Sbjct: 93  NADTAIKKNDTKGMRLWLAITAAMGAIFLVGQVYEYTHLEFGLTTNLFASAFYVLTGFHG 152

Query: 160 THLITDTYNTLVLTVLFF----TGPVEAKRFVDVSENAAYWYFVVISWVAIYAVIY 211
            H+   T   L +  + +     G   +++   +     YW+FV + W+ ++ ++Y
Sbjct: 153 LHV---TIGVLAIVAVLWRSRTQGHYSSEKHFGIEAAEIYWHFVDVIWIILFGLLY 205


>alr2516 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3
           Nos Nostoc sp. PCC 7120
          Length = 197

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 79/171 (46%), Gaps = 1/171 (0%)

Query: 42  WGTMGMVLVEGTVFALGVMSYFYLRSQSDQWPDGGIPPDLMWGTLNTLLMLLSCVPNWWT 101
           WG +  ++ E  +F     +Y + +  ++ WP  G   +L    +NT ++L S V   + 
Sbjct: 22  WGLLTFLISESLMFGGFFATYLFFKGTTEVWPPEGTEVELFVPAINTAILLSSSVVIHFG 81

Query: 102 NEAAKQFDLRKVRIGLCICMVFSLLFLGGRVGEFASLNVKWSDNAYGSVTWMLLGLHTTH 161
           + A K+ ++  +RI   +  +   +FL G+V E+ +L    + N + +  +++ G H  H
Sbjct: 82  DMAIKKGNVWGMRIWYFLTAIMGAVFLAGQVYEYQNLGYGLTANVFANCFYIMTGFHGLH 141

Query: 162 LITDTYNTLVLT-VLFFTGPVEAKRFVDVSENAAYWYFVVISWVAIYAVIY 211
           +       L +      +G     +   +     YW+FV I W+ ++ ++Y
Sbjct: 142 VFIGLLLILGVLWRSRRSGHYSETKHTGIEMAEIYWHFVDIIWIVLFTLVY 192