BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0089.p (652 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value alr2539 [E] COG0411 ABC-type branched-chain amino acid transport... 239 2e-62 DR2119 [E] COG0411 ABC-type branched-chain amino acid transport ... 237 7e-62 TM1138 [E] COG0411 ABC-type branched-chain amino acid transport ... 236 9e-62 DR1035 [E] COG0411 ABC-type branched-chain amino acid transport ... 231 4e-60 RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport... 228 3e-59 >alr2539 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 259 Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 122/251 (48%), Positives = 167/251 (66%), Gaps = 1/251 (0%) Query: 392 LLKVNQVLMQFGGLKALNKVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGAVEY 451 +L+ + +FGGL A+N V V + GLIGPNG+GK+T+ N++T + P+ G + Y Sbjct: 9 ILEAKSLTRRFGGLVAVNNVSFTVNHYEIFGLIGPNGAGKTTLFNLITALIPPSSGELIY 68 Query: 452 DGRTITGQPPSLIALGGVARTFQNVQLFGEMSATENVLVGLHHTFRSNVADVMVHSPRYL 511 + I P IA G+ARTFQN++LFGE+SA ENV++ H +S + ++ P Sbjct: 69 QNKAIAKLRPHQIASLGIARTFQNIRLFGELSALENVIIARHLHTKSTIFTGVLGLPPAP 128 Query: 512 REERAARERAAAILEFVGLADLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEPAAGL 571 +EE +RE+A +LE VGL+D A E+ARN YG QR LEI RAL L P +LLLDEPAAG+ Sbjct: 129 KEESRSREKALELLEMVGLSDRAQEKARNFAYGDQRRLEIARALALEPQILLLDEPAAGM 188 Query: 572 TAPDIKELVAIIRKIRD-VGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAAVQAD 630 + ++L IR+IRD +TIILIEHH+ +VM +CD + VLDFGQ IA G+P+ V+ D Sbjct: 189 NPSEKQQLSDFIREIRDRFNLTIILIEHHVPLVMGLCDRIAVLDFGQLIALGEPSVVRND 248 Query: 631 PKVIEAYLGGS 641 P VIEAYLG Sbjct: 249 PAVIEAYLGNE 259 >DR2119 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 259 Score = 237 bits (604), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 122/251 (48%), Positives = 167/251 (66%), Gaps = 3/251 (1%) Query: 392 LLKVNQVLMQFGGLKALNKVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGAVEY 451 +L+ + +FGGL A+N V DVR+G + GLIGPNG+GK+T+ N++TG+ P+ G + Sbjct: 11 ILQARNMTRRFGGLVAVNDVSFDVREGEIFGLIGPNGAGKTTLFNLMTGLTPPSSGTLTS 70 Query: 452 DGRTITGQPPSLIALGGVARTFQNVQLFGEMSATENVLVGLHHTFRSNVADVMVHSPRYL 511 G+T+TG P +A G++RTFQN++LF +SA ENV V H + + + + R Sbjct: 71 RGQTVTGLSPHRVAGLGISRTFQNIRLFRGLSALENVKVATHRQTHAGLWQGIFGADRA- 129 Query: 512 REERAARERAAAILEFVGLADLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEPAAGL 571 EER RA +L+ VGL+D A E A N YG QR LEI RAL P +LLLDEPAAG+ Sbjct: 130 -EERQVERRAWELLDLVGLSDRAGELAANFSYGDQRKLEIARALATEPRILLLDEPAAGM 188 Query: 572 TAPDIKELVAIIRKIRD-VGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAAVQAD 630 + +L A IR++RD +T++LIEHH+ +VM +CD V VL+FG+ IA G PA+VQ D Sbjct: 189 NTAEKGQLTAFIREVRDRFDLTVLLIEHHVPLVMGLCDRVAVLNFGELIAIGDPASVQRD 248 Query: 631 PKVIEAYLGGS 641 PKVIEAYLGG Sbjct: 249 PKVIEAYLGGE 259 >TM1138 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 284 Score = 236 bits (603), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 125/268 (46%), Positives = 174/268 (64%), Gaps = 20/268 (7%) Query: 392 LLKVNQVLMQFGGLKALNKVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGAVEY 451 LL ++ V MQFGGL A++ ++R+G + GLIGPNG+GK+T+ NV+TGIY PT G + + Sbjct: 11 LLLLDHVTMQFGGLVAVDDFTNEIREGELVGLIGPNGAGKTTVFNVITGIYTPTKGRIVF 70 Query: 452 DGRTITGQPPSLIALGGVARTFQNVQLFGEMSATENVLVGLHHTFRSNVAD---VMVHSP 508 + ITG P I G+ARTFQN++LF +M+ ENVLV HH + AD V P Sbjct: 71 NDIDITGLRPYQITHLGIARTFQNIRLFSDMTVLENVLVAQHHVLSNPDADRILVKHGKP 130 Query: 509 R----------------YLREERAARERAAAILEFVGLADLANEEARNLPYGKQRLLEIG 552 R YL++E+ ERA +++ VGL + E+A +LPYG+QR LEI Sbjct: 131 RKGHGRFWFWRAVTKIGYLKKEKEMVERAKDLIKRVGLEKVMYEKASSLPYGEQRKLEIA 190 Query: 553 RALGLNPSLLLLDEPAAGLTAPDIKELVAIIRKIR-DVGITIILIEHHMDVVMSICDTVT 611 RAL P L+LLDEPAAG+ + ++L+ I++IR D +T++LIEH M VVM IC+ + Sbjct: 191 RALATEPKLILLDEPAAGMNPKETEDLMEFIKQIRKDFNLTVLLIEHDMKVVMGICERII 250 Query: 612 VLDFGQKIAEGKPAAVQADPKVIEAYLG 639 V+D+G+ IAEG P +Q DP+VIEAYLG Sbjct: 251 VMDYGRIIAEGTPKEIQNDPRVIEAYLG 278 >DR1035 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 279 Score = 231 bits (590), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 114/254 (44%), Positives = 167/254 (65%), Gaps = 1/254 (0%) Query: 390 ATLLKVNQVLMQFGGLKALNKVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGAV 449 A LL V + FGGL A+N V V + + +IGPNG+GK+T N++TGIY P G V Sbjct: 16 APLLDVQHLTKSFGGLTAVNDVTFQVPERRIISVIGPNGAGKTTFFNLITGIYAPDRGTV 75 Query: 450 EYDGRTITGQPPSLIALGGVARTFQNVQLFGEMSATENVLVGLHHTFRSNVADVMVHSPR 509 GR++ G P + G++RTFQN++LF M+A EN+++G R D ++H+ R Sbjct: 76 NLAGRSLVGLRPDQVVEAGISRTFQNIRLFPSMTAEENIMLGRGVRLRGGFWDSVLHTAR 135 Query: 510 YLREERAARERAAAILEFVGLADLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEPAA 569 + ++E AR A +L+FVGL+ E + NLPYG QR LEI RAL P L+LLDEPAA Sbjct: 136 FQKDEEEARNTARLMLDFVGLSKWRGELSTNLPYGDQRKLEIARALATTPKLILLDEPAA 195 Query: 570 GLTAPDIKELVAIIRKIRD-VGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAAVQ 628 G+ + ++L A+IR IRD +G+T++LIEH M +VM++ + +TVL++G K+AEG P ++ Sbjct: 196 GMNPRETEDLKALIRAIRDELGVTVVLIEHDMRLVMTLSENITVLNYGSKLAEGLPHEIR 255 Query: 629 ADPKVIEAYLGGSA 642 +P+V+ AYLG A Sbjct: 256 NNPEVMTAYLGSGA 269 >RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 257 Score = 228 bits (582), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 121/257 (47%), Positives = 169/257 (65%), Gaps = 10/257 (3%) Query: 391 TLLKVNQVLMQFGGLKALNKVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGAVE 450 LL + V +FGGL+AL+ V L++R+G ++GLIGPNG+GK+T NV+TG+Y P G Sbjct: 5 NLLSIRGVNKRFGGLQALSDVSLEIREGEIYGLIGPNGAGKTTFFNVITGLYTPDAGEF- 63 Query: 451 YDGRTITGQP--PSL---IALGGVARTFQNVQLFGEMSATENVLVGLHHTFRSNVADVMV 505 + GQP P+ +A G+ARTFQN++LFG+M+A ENV+VG H ++ + + Sbjct: 64 ----VLAGQPYQPTAVHEVAKAGIARTFQNIRLFGDMTAAENVMVGRHVRTKAGLIGAVF 119 Query: 506 HSPRYLREERAARERAAAILEFVGLADLANEEARNLPYGKQRLLEIGRALGLNPSLLLLD 565 + EE + + A +L++VG+ AN ARNL YG QR LEI RAL P LL LD Sbjct: 120 RTKAAREEEASIEDWAHDLLDYVGIGKYANYTARNLSYGHQRRLEIARALATQPKLLALD 179 Query: 566 EPAAGLTAPDIKELVAIIRKIRDVGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPA 625 EPAAG+ A + EL ++ KIR G TI+LIEH + +VM +C+ +TVLD+G+ IA+G P Sbjct: 180 EPAAGMNATEKVELRGLLDKIRSDGKTILLIEHDVKLVMGLCNRLTVLDYGKVIAQGLPH 239 Query: 626 AVQADPKVIEAYLGGSA 642 VQ++ VIEAYLG SA Sbjct: 240 EVQSNQAVIEAYLGASA 256