BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0087.p (383 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1074 [E] COG0683 ABC-type branched-chain amino acid transport ... 117 5e-26 RSc3300 [E] COG0683 ABC-type branched-chain amino acid transport... 107 4e-23 BMEI1930 [E] COG0683 ABC-type branched-chain amino acid transpor... 107 7e-23 SMc01946 [E] COG0683 ABC-type branched-chain amino acid transpor... 105 1e-22 mll3970 Non COG 102 2e-21 >PA1074 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Pae Pseudomonas aeruginosa Length = 373 Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 100/340 (29%), Positives = 160/340 (47%), Gaps = 17/340 (5%) Query: 5 TQALVAAALLSLSLSSQAADPIKIGVSGPFTGGSAPMGVSMRDGVKLAVAEINAAGGLLG 64 ++ A A+ + S AAD IKI ++GP TG A G R G +A+ +IN AGG+ G Sbjct: 9 SRLFAAMAIAGFASYSMAADTIKIALAGPVTGPVAQYGDMQRAGALMAIEQINKAGGVNG 68 Query: 65 RQVQLVERDDEAKNERGVQIAQEMINKEKVVATVGYANTGVALASQRFYQEAKIPVITNV 124 Q++ V DD ++ V +A +++N + V VG+ + + Y++ + +IT Sbjct: 69 AQLEGVIYDDACDPKQAVAVANKVVN-DGVKFVVGHVCSSSTQPATDIYEDEGVLMITPS 127 Query: 125 ATGSVVTKQFEKDKDNYIFRTSANDAIQAKMLADEAIDKQKYTKVAILADSTNYGQLGRE 184 AT +T + K IFRT D +Q + ++ K +A+L D YG+ Sbjct: 128 ATAPEITSRGYK----LIFRTIGLDNMQGPVAGKFIAERYKDKTIAVLHDKQQYGEGIAT 183 Query: 185 DLEKALAAKKITPVAIEKYNLKDVDMTAQLLKSKQGGAQVVLTYGIGPELAQIANGMEKL 244 +++K + I E N D D A + K K+ G Q V G PE+ + ++ Sbjct: 184 EVKKTVEDAGIKVAVFEGLNAGDKDFNALISKLKKAGVQFVYFGGYHPEMGLLLRQAKQA 243 Query: 245 NWHVPIIGSWPLSMGN----FIDNSGKNGNGARMPQTFIQDGDTPKRKSFIEAYQKAYKV 300 +G P +GN I G A +P+ F QD PK K+ I+A+ KA Sbjct: 244 GLDARFMG--PEGVGNSEITAIAGDASEGMLATLPRAFEQD---PKNKALIDAF-KAKNQ 297 Query: 301 DRMPSAVSAAQGYDSILLLAAAIKQAGSTDGEKVRGALES 340 D PS + Y ++ ++A I++AG D EKV AL + Sbjct: 298 D--PSGIFVLPAYSAVTVIAKGIEKAGEADPEKVAEALRA 335 >RSc3300 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 377 Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 112/381 (29%), Positives = 170/381 (44%), Gaps = 22/381 (5%) Query: 6 QALVAAALLSLSLSSQAADPIKIGVSGPFTGGSAPMGVSMRDGVKLAVAEINAAG-GLLG 64 Q VAAAL +L ++ A + IK+G + P TG A G M++GV LA+ E NA + G Sbjct: 5 QLWVAAALCALGSAASAQEVIKLGFAAPMTGAQAQYGKDMQNGVTLAIEEFNATKPKIAG 64 Query: 65 RQV--QLVERDDEAKNERGVQIAQEMINKEKVVATVGYANTGVALASQRFYQEAKIPVIT 122 + V QLV DD+A + G +AQ++++ + VG+ N+G ++ + R Y +A I I Sbjct: 65 KDVKFQLVSEDDQADPKTGTTVAQKLVDG-GIKGMVGHFNSGTSIPASRVYNQAGIAQIA 123 Query: 123 NVATGSVVTKQFEKDKDNYIFRTSANDAIQAKMLADEAIDKQKYTKVAILADSTNYGQLG 182 +AT TKQ K FR +D Q ++ A+ K Y +AI+ D T YGQ Sbjct: 124 -MATAPEYTKQGYKT----TFRMMTSDTQQGSVVGTFAVKKLGYKNLAIVDDRTAYGQGL 178 Query: 183 REDLEKALAAKKITPVAIEKYNLKDVDMTAQLLKSKQGGAQVVLTYGIGPELAQIANGME 242 ++ EKA A T V E N K D A L + K V G + A + M Sbjct: 179 ADEFEKAAKAAGATIVRREYTNDKASDFKAILTQIKSKNPDAVFYGGAEGQSAPLVKQMR 238 Query: 243 KLNWHVPIIGSWPLSMGNFIDNSG-KNGNGARMPQTFIQDGDTPKRKSFIEAYQKAYKVD 301 +L ++ +FI +G G + P + + Y+K Sbjct: 239 ELGMKATLMSGEMSKTDDFIKLAGAPAAEGVVCSLAGLPLEQMPGGAGYKQRYEK----- 293 Query: 302 RMPSAVS--AAQGYDSILLLAAAIKQAGSTDGEKVRGALESLNTKIEGVVTTYNKPFTRD 359 R S V + YD + L A+ AGS+D K L + N +GV K + D Sbjct: 294 RFGSTVQTYSPYAYDGAMALMKAMVAAGSSDPSKYLPILAATNA--QGVTA---KHYAYD 348 Query: 360 DHEAIKANMVVMGEVKNGRVV 380 D +K + + +V G+ V Sbjct: 349 DKGDLKDGGITVYKVTGGKWV 369 >BMEI1930 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 368 Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 10/316 (3%) Query: 15 SLSLSSQAADPIKIGVSGPFTGGSAPMGVSMRDGVKLAVAEINAAGGLLGRQVQLVERDD 74 ++ +S A I IGV P TG A G ++ G + AV IN AGG+ G +V L DD Sbjct: 14 TIGFASAAYADITIGVIAPLTGPVAAFGDQVKKGAETAVEVINKAGGIKGEKVVLKFADD 73 Query: 75 EAKNERGVQIAQEMINKEKVVATVGYANTGVALASQRFYQEAKIPVITNVATGSVVTKQF 134 + ++GV A +++ + + VG TGVA+ E + ++T ATG +T + Sbjct: 74 AGEPKQGVSAANQIVG-DGIKFVVGLVTTGVAVPVSDVLSENGVLMVTPTATGPDLTARG 132 Query: 135 EKDKDNYIFRTSANDAIQAKMLADEAIDKQKYTKVAILADSTNYGQLGREDLEKALAAKK 194 ++ +FRT D QA+++AD + K KVA++ D YG+ + + A+ Sbjct: 133 LEN----VFRTCGRDGQQAEVMADYVLKNMKDKKVAVIHDKGAYGKGLADAFKAAINKGG 188 Query: 195 ITPVAIEKYNLKDVDMTAQLLKSKQGGAQVVLTYGIGPELAQIANGMEKLNWHVPIIGSW 254 IT V + D D +A + K K GA+VV G E ++ + ++G Sbjct: 189 ITEVHYDSVTPGDKDFSALVTKLKSAGAEVVYFGGYHAEGGLLSRQLHDAGMQALVLGGE 248 Query: 255 PLSMGNFIDNSGKNGNGARMPQTFIQDGDTPKRKSFIEAYQKAYKVDRMPSAVSAAQGYD 314 LS + G N G F D K + +A Q A K +P+ Y Sbjct: 249 GLSNTEYWAIGGTNAQG----TLFTNAKDATKNPAAKDAIQ-ALKAKNIPAEAFTMNAYA 303 Query: 315 SILLLAAAIKQAGSTD 330 ++ ++ A I++AGSTD Sbjct: 304 AVEVIKAGIERAGSTD 319 >SMc01946 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 372 Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 97/339 (28%), Positives = 158/339 (46%), Gaps = 13/339 (3%) Query: 4 KTQALVAAALLSL-SLSSQAADPIKIGVSGPFTGGSAPMGVSMRDGVKLAVAEINAAGGL 62 K L A AL ++ + S A I +GV GP TG +A G ++ G + A +INAAGG+ Sbjct: 2 KKSLLSAVALTAMVAFSGTAWADILVGVGGPLTGPNAAFGAQLQKGAEQAAEDINAAGGI 61 Query: 63 LGRQVQLVERDDEAKNERGVQIAQEMINKEKVVATVGYANTGVALASQRFYQEAKIPVIT 122 G Q+++V DD + ++GV +AQ+ + + V VG+ N+GV++ + Y E I +T Sbjct: 62 NGEQIKVVLGDDVSDPKQGVSVAQKFV-ADGVKFVVGHFNSGVSIPASEIYAENGILQVT 120 Query: 123 NVATGSVVTKQFEKDKDNYIFRTSANDAIQAKMLADEAIDKQKYTKVAILADSTNYGQLG 182 +T QF + FRT D Q + K KVA++ D T YGQ Sbjct: 121 PAST----NPQFTERGLWNTFRTCGRDDQQGAVAGAYIAANFKDAKVAVIHDKTPYGQGL 176 Query: 183 REDLEKALAAKKITPVAIEKYNLKDVDMTAQLLKSKQGGAQVVLTYGIGPELAQIANGME 242 ++ +K++ +T E N D D +A + K KQ G +V G+ E I M+ Sbjct: 177 ADETKKSMNEAGVTEALYEGINTGDKDFSALIAKMKQAGVSIVYYGGLHTEAGLIMRQMK 236 Query: 243 KLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDG-DTPKRKSFIEAYQKAYKVD 301 ++ + +G +G M TF D +P K +E ++ A Sbjct: 237 DQGLKATMMSGDGIVSNELASIAGDAVDGTLM--TFAPDPRKSPAAKDLVEKFRAA---G 291 Query: 302 RMPSAVSAAQGYDSILLLAAAIKQAGSTDGEKVRGALES 340 P A + Y ++ ++A K AG+TD + V A+++ Sbjct: 292 FEPEAYT-LYAYAALQVIAEGAKAAGNTDPQAVAEAIKA 329 >mll3970 Non COG Length = 371 Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 6/235 (2%) Query: 4 KTQALVAAALLSL-SLSSQAADPIKIGVSGPFTGGSAPMGVSMRDGVKLAVAEINAAGGL 62 K L A AL +L + A + GV+GP TG +A G ++ G + AVAEINA GG+ Sbjct: 2 KKTLLSAVALTALVAFGGNAWADVIFGVAGPITGPNAAFGAQLQKGAEAAVAEINAKGGI 61 Query: 63 LGRQVQLVERDDEAKNERGVQIAQEMINKEKVVATVGYANTGVALASQRFYQEAKIPVIT 122 G Q++L DD + ++G+ +A + + + V +G+ N+GV++ + Y E I IT Sbjct: 62 NGEQIKLEVGDDVSDPKQGISVANKFVG-DGVKFVIGHFNSGVSIPASEVYAENNIVEIT 120 Query: 123 NVATGSVVTKQFEKDKDNYIFRTSANDAIQAKMLADEAIDKQKYTKVAILADSTNYGQLG 182 AT T E+ N +FRT D Q + K KVA++ D T YGQ Sbjct: 121 PAATNPKFT---ERGLWN-VFRTCGRDDQQGSIAGAYIAANFKDAKVAVVHDKTPYGQGL 176 Query: 183 REDLEKALAAKKITPVAIEKYNLKDVDMTAQLLKSKQGGAQVVLTYGIGPELAQI 237 ++ +KA+ A + V E N+ D D +A + K K+ G ++ G+ E I Sbjct: 177 ADETKKAMNAAGVKEVMYEGVNVGDKDFSALIAKMKEAGVTLIYWGGLHTEAGLI 231