BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0082.p (291 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1630 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer... 148 2e-35 BMEII1022 [K] COG1414 Transcriptional regulator Bme Brucella mel... 145 1e-34 BMEII0219 [K] COG1414 Transcriptional regulator Bme Brucella mel... 123 5e-28 RSc0757 [K] COG1414 Transcriptional regulator Rso Ralstonia sola... 118 2e-26 PA3508 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer... 72 1e-12 >PA1630 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 288 Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 135/253 (53%), Gaps = 2/253 (0%) Query: 31 RDVPINANDIIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTRLTQTLTDQGFL 90 +D + + + RGL +L F P + LGNQE++ KTG+PK TV+RLT TLT G+L Sbjct: 34 KDEELKDRQFVTALARGLELLRCFTPRESLLGNQELAKKTGLPKPTVSRLTHTLTRLGYL 93 Query: 91 NHSTRLRKYGLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSLVGRDGLDVSLL 150 H KY L V+ GY + N ALAR M+++A V++ RD L + L Sbjct: 94 RHLPHSGKYQLEVGVMSFGYAMLSNLSIRALARPLMEEMAGYAKAAVAMAARDRLSMVYL 153 Query: 151 ENCHSTSSLATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRLRYQQEYRVNLR 210 + H ++L T+ VG+ + + G A L+ +P ER ++L HIR R+ +++ +R Sbjct: 154 DVVHGEANL-TMRRQVGSHLSLHRSAIGRACLAAMPEDEREFILGHIRKRHPEDW-PEVR 211 Query: 211 SRVADAVAQVSQKGYCVSICELGSEITVAAAPLNIPDRPPMAIGCAGPARLITREKLREE 270 + A + G+C+S+ E ++ L+ +A C GP+ + REKL ++ Sbjct: 212 KGLERAFRDYADYGFCLSLGEWQRDVNAVGVALHHESHGLLAFNCGGPSFHLKREKLEDD 271 Query: 271 IGPRLVELVTRLQ 283 IGPRL+ +V ++ Sbjct: 272 IGPRLLHMVHNIE 284 >BMEII1022 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 284 Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 135/260 (51%), Gaps = 4/260 (1%) Query: 22 LRAPGNGSPRDVPINAND--IIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTR 79 +R P +P + + D + + RGL +L F P + LGNQEI+ KTG+PK TV+R Sbjct: 19 MRKPTMLTPLEAGVEEEDRQFVTALARGLEVLRCFTPTENTLGNQEIAHKTGLPKPTVSR 78 Query: 80 LTQTLTDQGFLNHSTRLRKYGLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSL 139 LT TL G+L Y L +L LGY + N +A MQ LAD V++ Sbjct: 79 LTHTLVRLGYLRQDALSGLYQLDIGILRLGYAMLSNLMIRTVASPLMQVLADYAKAAVAM 138 Query: 140 VGRDGLDVSLLENCHSTSSLATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRL 199 RD L + L+ ++ T+ +G+ P+A + G A L+ +P ER ++L+HIR Sbjct: 139 AARDRLSMVYLDVVQGEGNM-TMRRQIGSTLPLAGSSVGRACLAAMPEDERTFILEHIRE 197 Query: 200 RYQQEYRVNLRSRVADAVAQVSQKGYCVSICELGSEITVAAAPLNIPDRPPMAIGCAGPA 259 R + + ++R + A+ GYC+SI E ++ A PL + C GP+ Sbjct: 198 REPENW-PSIRKGLDRALRDFEDYGYCLSIGEWHRDVNSVAVPLVHKQYGVLVFNCGGPS 256 Query: 260 RLITREKLREEIGPRLVELV 279 + REKL ++IGPRL+E+V Sbjct: 257 FQLPREKLEDDIGPRLIEMV 276 >BMEII0219 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 308 Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 136/257 (52%), Gaps = 3/257 (1%) Query: 29 SPRDVPINANDIIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTRLTQTLTDQG 88 + +D+ ++ + + + RGL IL F P D LGNQE+ +TG+PKATV+R+T TL + G Sbjct: 44 TTQDLEKDSAQVSSALVRGLEILRSFTPHDLSLGNQELIDRTGLPKATVSRMTATLVNLG 103 Query: 89 FLNHSTRLRKYGLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSLVGRDGLDVS 148 +L++ L +Y + A + LGY + + +A M+KLA+ GV V++ R+ ++ Sbjct: 104 YLDYDEMLGRYRIGPATIALGYSGLSANVVVHIAMPLMRKLAEKTGVAVAMGLREQQEMV 163 Query: 149 LLENCHSTSSLATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRLRYQQEYRVN 208 + N S + + +L +NVG+R PI GL+ +G+ ++R LL+ + L+ + E+ Sbjct: 164 YIANARSENPV-SLRLNVGSRLPIWKTAMGLSYYAGMEESQREALLERM-LQCEPEHAER 221 Query: 209 LRSRVADAVAQVSQKGYCVSICELGSEITVAAAPLNIPDRPPM-AIGCAGPARLITREKL 267 + A+ ++ G+ VS + S I P D + AI C G + R Sbjct: 222 ILRLTNHALDDYARDGFVVSCGDWYSYINAVGVPFRPTDGTQLVAITCGGITDIAPRGVC 281 Query: 268 REEIGPRLVELVTRLQD 284 EIGP L EL LQ+ Sbjct: 282 YGEIGPALKELAAELQE 298 >RSc0757 [K] COG1414 Transcriptional regulator Rso Ralstonia solanacearum Length = 273 Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 123/247 (49%), Gaps = 4/247 (1%) Query: 39 DIIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTRLTQTLTDQGFLNHSTRLRK 98 + + + RGL +L F P D LGNQE +TG PKATV+RL TL G+L + L K Sbjct: 20 NFVTALARGLELLRAFRPGDTLLGNQEFVRRTGFPKATVSRLAGTLVALGYLRYDDALGK 79 Query: 99 YGLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSLVGRDGLDVSLLENCH--ST 156 YGL A VL LG+ + +S LAR HM A GV +SL R+ LD+ LE S Sbjct: 80 YGLDAGVLALGFAYLASSDVVQLARPHMSAFAQRHGVSISLGRRERLDMVYLETIRHDSP 139 Query: 157 SSLATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRLRYQQEYRVNLRSRVADA 216 + + G+ VG+R + ++ G A L+ LP A R D +R + Q + DA Sbjct: 140 AMGGSSGLGVGSRLSMLSSSMGRAYLAALPAARRERRYDALRTQ-QPAQWAAEGAAATDA 198 Query: 217 VAQVSQKGYCVSICELGSEITVAAAPLNIP-DRPPMAIGCAGPARLITREKLREEIGPRL 275 V ++GY VS+ E I A +P R P + C+ P ++R E+ P L Sbjct: 199 VKAGVREGYAVSLREWHPAIHACAVAFFVPGQREPYVVSCSAPHTAADAGRIRAELVPAL 258 Query: 276 VELVTRL 282 EL RL Sbjct: 259 RELAARL 265 >PA3508 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 277 Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 9/207 (4%) Query: 40 IIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTRLTQTLTDQGFLNHSTRLRKY 99 I+ +ERGL +L F D+ L E++ + +P++T+ RL TL GF+ + +Y Sbjct: 12 IVPGLERGLLLLCEFSRKDRTLTAPELARRLKLPRSTIFRLLTTLEAMGFVTRNG--NEY 69 Query: 100 GLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSLVGRDGLDVSLLENCHSTSSL 159 L AVL LG+ + + L + + +L D+ +LV RDG + + ++ L Sbjct: 70 RLGMAVLRLGFEYLASLELTELGQPLLNRLCDEIRYPCNLVVRDGRSIVYVAKVSPSTPL 129 Query: 160 ATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRLRYQQEYRVNL-RS--RVADA 216 ++ VNVG R P A G LL L L E L +L +++ N RS + D Sbjct: 130 SS-SVNVGTRLPAHATVLGRILLQDLSLGELRELYPEEQL---EQFSPNTPRSVLELFDM 185 Query: 217 VAQVSQKGYCVSICELGSEITVAAAPL 243 V Q+G+ + I+ AAP+ Sbjct: 186 VQGDRQRGFVQGEGFFEASISTVAAPV 212