BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0081.p (286 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1630 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer... 112 9e-25 BMEII1022 [K] COG1414 Transcriptional regulator Bme Brucella mel... 110 3e-24 BMEII0219 [K] COG1414 Transcriptional regulator Bme Brucella mel... 110 3e-24 RSc0757 [K] COG1414 Transcriptional regulator Rso Ralstonia sola... 85 2e-16 PA0155 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer... 84 4e-16 >PA1630 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 288 Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 4/244 (1%) Query: 36 LERALTVLKAFGGYPGPVTNAELVRRTGFSKASVSRITATLVALGYLDRASDGLRYQIGM 95 L R L +L+ F + N EL ++TG K +VSR+T TL LGYL +YQ+ + Sbjct: 47 LARGLELLRCFTPRESLLGNQELAKKTGLPKPTVSRLTHTLTRLGYLRHLPHSGKYQLEV 106 Query: 96 QGLVLGHNYRANNPVKLYARPIMQEYADEHDMSVALATGDGMDTLYIEYCKSPRIATLRM 155 + G+ +N ++ ARP+M+E A +VA+A D + +Y++ T+R Sbjct: 107 GVMSFGYAMLSNLSIRALARPLMEEMAGYAKAAVAMAARDRLSMVYLDVVHGEANLTMRR 166 Query: 156 GVGMRMPMELTSIGRTYLWAQRPQERERLLSDIRRRG-DDKQAANSMLRIEQAFDHLEKF 214 VG + + ++IGR L A ERE +L IR+R +D L E+AF + Sbjct: 167 QVGSHLSLHRSAIGRACLAAMPEDEREFILGHIRKRHPEDWPEVRKGL--ERAFRDYADY 224 Query: 215 GYCVAMGEFQRDSFGISVPVYLGNPAIPMALNCGGILPAPSDEHIHNVLVPRLVQTAVRL 274 G+C+++GE+QRD + V ++ + + +A NCGG E + + + PRL+ + Sbjct: 225 GFCLSLGEWQRDVNAVGVALHHESHGL-LAFNCGGPSFHLKREKLEDDIGPRLLHMVHNI 283 Query: 275 AAAT 278 AAT Sbjct: 284 EAAT 287 >BMEII1022 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 284 Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 134/258 (51%), Gaps = 3/258 (1%) Query: 21 DASTEKAEKAGGTHTLERALTVLKAFGGYPGPVTNAELVRRTGFSKASVSRITATLVALG 80 +A E+ ++ T L R L VL+ F + N E+ +TG K +VSR+T TLV LG Sbjct: 29 EAGVEEEDRQFVT-ALARGLEVLRCFTPTENTLGNQEIAHKTGLPKPTVSRLTHTLVRLG 87 Query: 81 YLDRASDGLRYQIGMQGLVLGHNYRANNPVKLYARPIMQEYADEHDMSVALATGDGMDTL 140 YL + + YQ+ + L LG+ +N ++ A P+MQ AD +VA+A D + + Sbjct: 88 YLRQDALSGLYQLDIGILRLGYAMLSNLMIRTVASPLMQVLADYAKAAVAMAARDRLSMV 147 Query: 141 YIEYCKSPRIATLRMGVGMRMPMELTSIGRTYLWAQRPQERERLLSDIRRRGDDKQAANS 200 Y++ + T+R +G +P+ +S+GR L A ER +L IR R + + + Sbjct: 148 YLDVVQGEGNMTMRRQIGSTLPLAGSSVGRACLAAMPEDERTFILEHIRER-EPENWPSI 206 Query: 201 MLRIEQAFDHLEKFGYCVAMGEFQRDSFGISVPVYLGNPAIPMALNCGGILPAPSDEHIH 260 +++A E +GYC+++GE+ RD ++VP+ + + NCGG E + Sbjct: 207 RKGLDRALRDFEDYGYCLSIGEWHRDVNSVAVPLVHKQYGV-LVFNCGGPSFQLPREKLE 265 Query: 261 NVLVPRLVQTAVRLAAAT 278 + + PRL++ +++A Sbjct: 266 DDIGPRLIEMVHNISSAV 283 >BMEII0219 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 308 Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 5/231 (2%) Query: 23 STEKAEK--AGGTHTLERALTVLKAFGGYPGPVTNAELVRRTGFSKASVSRITATLVALG 80 +T+ EK A + L R L +L++F + + N EL+ RTG KA+VSR+TATLV LG Sbjct: 44 TTQDLEKDSAQVSSALVRGLEILRSFTPHDLSLGNQELIDRTGLPKATVSRMTATLVNLG 103 Query: 81 YLDRASDGLRYQIGMQGLVLGHNYRANNPVKLYARPIMQEYADEHDMSVALATGDGMDTL 140 YLD RY+IG + LG++ + N V A P+M++ A++ ++VA+ + + + Sbjct: 104 YLDYDEMLGRYRIGPATIALGYSGLSANVVVHIAMPLMRKLAEKTGVAVAMGLREQQEMV 163 Query: 141 YIEYCKSPRIATLRMGVGMRMPMELTSIGRTYLWAQRPQERERLLSDIRRRGDDKQAANS 200 YI +S +LR+ VG R+P+ T++G +Y +RE LL R + + A Sbjct: 164 YIANARSENPVSLRLNVGSRLPIWKTAMGLSYYAGMEESQREALLE--RMLQCEPEHAER 221 Query: 201 MLRI-EQAFDHLEKFGYCVAMGEFQRDSFGISVPVYLGNPAIPMALNCGGI 250 +LR+ A D + G+ V+ G++ + VP + +A+ CGGI Sbjct: 222 ILRLTNHALDDYARDGFVVSCGDWYSYINAVGVPFRPTDGTQLVAITCGGI 272 >RSc0757 [K] COG1414 Transcriptional regulator Rso Ralstonia solanacearum Length = 273 Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 122/243 (50%), Gaps = 6/243 (2%) Query: 36 LERALTVLKAFGGYPGPVTNAELVRRTGFSKASVSRITATLVALGYLDRASDGL-RYQIG 94 L R L +L+AF + N E VRRTGF KA+VSR+ TLVALGYL R D L +Y + Sbjct: 25 LARGLELLRAFRPGDTLLGNQEFVRRTGFPKATVSRLAGTLVALGYL-RYDDALGKYGLD 83 Query: 95 MQGLVLGHNYRANNPVKLYARPIMQEYADEHDMSVALATGDGMDTLYIEYCK--SPRI-A 151 L LG Y A++ V ARP M +A H +S++L + +D +Y+E + SP + Sbjct: 84 AGVLALGFAYLASSDVVQLARPHMSAFAQRHGVSISLGRRERLDMVYLETIRHDSPAMGG 143 Query: 152 TLRMGVGMRMPMELTSIGRTYLWAQRPQERERLLSDIRRRGDDKQAANSMLRIEQAFDHL 211 + +GVG R+ M +S+GR YL A RER +R + + AA + + Sbjct: 144 SSGLGVGSRLSMLSSSMGRAYLAALPAARRERRYDALRTQQPAQWAAEGAAATDAVKAGV 203 Query: 212 EKFGYCVAMGEFQRDSFGISVPVYLGNPAIPMALNCGGILPAPSDEHIHNVLVPRLVQTA 271 + GY V++ E+ +V ++ P ++C A I LVP L + A Sbjct: 204 RE-GYAVSLREWHPAIHACAVAFFVPGQREPYVVSCSAPHTAADAGRIRAELVPALRELA 262 Query: 272 VRL 274 RL Sbjct: 263 ARL 265 >PA0155 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 279 Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 3/243 (1%) Query: 35 TLERALTVLKAFGGYPGPVTNAELVRRTGFSKASVSRITATLVALGYLDRASDGLRYQIG 94 +L R L V+ AF +T A++ RT +A+V R TL+ LGY +DG Y + Sbjct: 35 SLARGLAVIHAFQERKRHLTIAQISHRTEIPRAAVRRCLHTLMQLGY--ATTDGRTYSLL 92 Query: 95 MQGLVLGHNYRANNPVKLYARPIMQEYADEHDMSVALATGDGMDTLYIEYCKSP-RIATL 153 + L LGH Y ++ P+ + A+PI+ +++ + ++AT +G D LYI +P R+ ++ Sbjct: 93 PKVLTLGHAYLSSTPLAITAQPILDRLSEQLHEACSMATLEGDDVLYIARSATPQRLISV 152 Query: 154 RMGVGMRMPMELTSIGRTYLWAQRPQERERLLSDIRRRGDDKQAANSMLRIEQAFDHLEK 213 + VG R+P TS+GR L A + + + + + + + Sbjct: 153 DLNVGSRLPAYCTSMGRILLAALDDDALHAYFGGVEMQAKTSRTLYTPETLLPCLVEIRR 212 Query: 214 FGYCVAMGEFQRDSFGISVPVYLGNPAIPMALNCGGILPAPSDEHIHNVLVPRLVQTAVR 273 G+C+ E + ++VPV + ALN G S + + +P L++ + Sbjct: 213 QGWCIVDQELEVGLRSLAVPVRDSAGHVLAALNVGTHAGRVSRAELESRFLPLLLEASRE 272 Query: 274 LAA 276 L+A Sbjct: 273 LSA 275