BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0077.p         (137 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1583 [L] COG0776 Bacterial nucleoid DNA-binding protein Rso R...   170   7e-43
PA2738 [L] COG0776 Bacterial nucleoid DNA-binding protein Pae Ps...   144   5e-35
NMB0729 [L] COG0776 Bacterial nucleoid DNA-binding protein Nme N...   143   1e-34
NMA0938 [L] COG0776 Bacterial nucleoid DNA-binding protein NmA N...   143   1e-34
VC1222 [L] COG0776 Bacterial nucleoid DNA-binding protein Vch Vi...   142   2e-34

>RSc1583 [L] COG0776 Bacterial nucleoid DNA-binding protein Rso Ralstonia
           solanacearum
          Length = 104

 Score =  170 bits (431), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 81/93 (87%), Positives = 88/93 (94%)

Query: 34  LPTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ 93
           +PTLTKAELAE+LFEQVGLNKRE+KDMVE FFD IR ALE+G++VKLSGFGNFQLRDKPQ
Sbjct: 1   MPTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQ 60

Query: 94  RPGRNPKTGEEIPITARRVVTFHASQKLKEMVE 126
           RPGRNPKTGE IPITARRVVTFHASQKLK +VE
Sbjct: 61  RPGRNPKTGEIIPITARRVVTFHASQKLKALVE 93


>PA2738 [L] COG0776 Bacterial nucleoid DNA-binding protein Pae Pseudomonas
           aeruginosa
          Length = 100

 Score =  144 bits (363), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 80/97 (82%)

Query: 34  LPTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ 93
           +  LTKAE+AE L+E++GLNKREAK++VE FF+EIR ALE  E VKLSGFGNF LRDK Q
Sbjct: 1   MGALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQ 60

Query: 94  RPGRNPKTGEEIPITARRVVTFHASQKLKEMVEVSSG 130
           RPGRNPKTGEEIPITARRVVTF   QKLK  VE  +G
Sbjct: 61  RPGRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAG 97


>NMB0729 [L] COG0776 Bacterial nucleoid DNA-binding protein Nme Neisseria
           meningitidis MC58
          Length = 100

 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 81/92 (88%), Gaps = 1/92 (1%)

Query: 36  TLTKAELAELLFEQVG-LNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQR 94
           TLTKAELA++L ++V  + K +AK++VE FF+EIR+ L  GE +K+SGFGNFQLRDKPQR
Sbjct: 2   TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61

Query: 95  PGRNPKTGEEIPITARRVVTFHASQKLKEMVE 126
           PGRNPKTGEE+PITARRVVTFHASQKLK MVE
Sbjct: 62  PGRNPKTGEEVPITARRVVTFHASQKLKSMVE 93


>NMA0938 [L] COG0776 Bacterial nucleoid DNA-binding protein NmA Neisseria
           meningitidis Z2491
          Length = 100

 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 81/92 (88%), Gaps = 1/92 (1%)

Query: 36  TLTKAELAELLFEQVG-LNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQR 94
           TLTKAELA++L ++V  + K +AK++VE FF+EIR+ L  GE +K+SGFGNFQLRDKPQR
Sbjct: 2   TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61

Query: 95  PGRNPKTGEEIPITARRVVTFHASQKLKEMVE 126
           PGRNPKTGEE+PITARRVVTFHASQKLK MVE
Sbjct: 62  PGRNPKTGEEVPITARRVVTFHASQKLKSMVE 93


>VC1222 [L] COG0776 Bacterial nucleoid DNA-binding protein Vch Vibrio
           cholerae
          Length = 98

 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 77/90 (85%)

Query: 37  LTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPG 96
           LTKAELAE LFEQ+G++KR+AKD VE FF+EIR ALE GE VKLSGFGNF LRDK +RPG
Sbjct: 3   LTKAELAEALFEQLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62

Query: 97  RNPKTGEEIPITARRVVTFHASQKLKEMVE 126
           RNPKTGE+IPITARRVVTF   QKLK  VE
Sbjct: 63  RNPKTGEDIPITARRVVTFRPGQKLKARVE 92