BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0076.p         (136 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1584 [K] COG0789 Predicted transcriptional regulators Rso Ral...   162   1e-40
XF0744 [K] COG0789 Predicted transcriptional regulators Xfa Xyle...   127   5e-30
PA2737 [K] COG0789 Predicted transcriptional regulators Pae Pseu...    92   5e-19
mlr8426 [K] COG0789 Predicted transcriptional regulators Mlo Mes...    77   1e-14
BMEI1178 [K] COG0789 Predicted transcriptional regulators Bme Br...    76   2e-14

>RSc1584 [K] COG0789 Predicted transcriptional regulators Rso Ralstonia
          solanacearum
          Length = 146

 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/89 (86%), Positives = 81/89 (91%), Gaps = 6/89 (6%)

Query: 2  NERVNKPAVIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYYQ 61
           ER+N      LPPIPAKRYFTIGEVS+LC VKPHVLRYWEQEFTQLKPVKRRGNRRYYQ
Sbjct: 7  TERIN------LPPIPAKRYFTIGEVSDLCAVKPHVLRYWEQEFTQLKPVKRRGNRRYYQ 60

Query: 62 HHEVLLIRRIRELLYEQGFTISGARNKLD 90
          HHEVLLIRRIRELLYEQGFTI+GARN+LD
Sbjct: 61 HHEVLLIRRIRELLYEQGFTINGARNRLD 89


>XF0744 [K] COG0789 Predicted transcriptional regulators Xfa Xylella
          fastidiosa 9a5c
          Length = 120

 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 58/79 (73%), Positives = 68/79 (86%)

Query: 13 LPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRRIR 72
          LP IPAKRYF+IGEV++LC VK HVLRYWE EF  L+P KRRGNRRYYQ H+VLL+R+IR
Sbjct: 12 LPTIPAKRYFSIGEVADLCDVKQHVLRYWETEFPSLEPAKRRGNRRYYQRHDVLLVRQIR 71

Query: 73 ELLYEQGFTISGARNKLDG 91
           LLYEQG+TI GAR +L+G
Sbjct: 72 SLLYEQGYTIGGARLRLEG 90


>PA2737 [K] COG0789 Predicted transcriptional regulators Pae Pseudomonas
          aeruginosa
          Length = 85

 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 47/55 (85%)

Query: 37 VLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRRIRELLYEQGFTISGARNKLDG 91
          +LRYWEQEF QL PVKRRGNRRYYQ  +VL+IR+IR LLY+QGFTI GAR +L G
Sbjct: 1  MLRYWEQEFPQLNPVKRRGNRRYYQRQDVLMIRQIRALLYDQGFTIGGARQRLSG 55


>mlr8426 [K] COG0789 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 210

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 48/69 (69%)

Query: 21  YFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRRIRELLYEQGF 80
           + TI EV+E   +  HVLR+WE  F Q+KP+KR G RRYY+  +V LI+ IR +LY+QG+
Sbjct: 39  FRTISEVAEDLDLPQHVLRFWETRFNQIKPMKRGGGRRYYRPQDVELIKGIRHMLYDQGY 98

Query: 81  TISGARNKL 89
           TI G +  L
Sbjct: 99  TIKGVQKLL 107


>BMEI1178 [K] COG0789 Predicted transcriptional regulators Bme Brucella
          melitensis
          Length = 193

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 47/64 (73%)

Query: 21 YFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRRIRELLYEQGF 80
          + TI EV+E   +  HVLR+WE  FTQ+KP+KR G RRYY+  +V L++ IR LLY+QG+
Sbjct: 22 FRTISEVAEDLDLPQHVLRFWETRFTQIKPMKRGGGRRYYRPLDVELLKGIRHLLYDQGY 81

Query: 81 TISG 84
          TI G
Sbjct: 82 TIKG 85