BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0054.p         (154 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1018 [K] COG1959 Predicted transcriptional regulator Rso Rals...   212   3e-55
YPO2897 [K] COG1959 Predicted transcriptional regulator Ype Yers...   144   8e-35
PA3815 [K] COG1959 Predicted transcriptional regulator Pae Pseud...   139   2e-33
HI0379 [K] COG1959 Predicted transcriptional regulator Hin Haemo...   137   1e-32
NMB1378 [K] COG1959 Predicted transcriptional regulator Nme Neis...   135   4e-32

>RSc1018 [K] COG1959 Predicted transcriptional regulator Rso Ralstonia
           solanacearum
          Length = 193

 Score =  212 bits (539), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 116/134 (86%), Gaps = 5/134 (3%)

Query: 1   MIDLALRHGNGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRGPGGGYNLARKAAD 60
           MIDLALR   GPVTL+ IS+RQ+ISLSYLEQLFGKLRRH+IVESVRGPGGGY+LAR+A D
Sbjct: 14  MIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRGPGGGYSLARRADD 73

Query: 61  VSVADIIIAVDEPLDATQCGGKENCHSVTHPGGTRCMTHDLWSTLNEKMVEYLDSVSLQD 120
           V+VADIIIAVDEPLDATQCGGK NC    H G  RCMTHDLW+TLN+KMVEYLDSVSLQ+
Sbjct: 74  VTVADIIIAVDEPLDATQCGGKGNCGGEEHSG--RCMTHDLWATLNQKMVEYLDSVSLQN 131

Query: 121 LVNQQHTKEQKHPE 134
           LV+QQ    ++ PE
Sbjct: 132 LVDQQR---ERQPE 142


>YPO2897 [K] COG1959 Predicted transcriptional regulator Ype Yersinia pestis
          Length = 164

 Score =  144 bits (363), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/141 (50%), Positives = 97/141 (68%), Gaps = 9/141 (6%)

Query: 1   MIDLALRHGNGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRGPGGGYNLARKAAD 60
           M+D+AL   +GPV L+ ISERQ ISLSYLEQLF +LR++ +V SVRGPGGGY L + A+ 
Sbjct: 14  MLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRGPGGGYLLGKDASA 73

Query: 61  VSVADIIIAVDEPLDATQCGGKENCHSVTHPGGTRCMTHDLWSTLNEKMVEYLDSVSLQD 120
           ++V  +I AVDE +DAT+C GKE C      GG RC+TH LW  L+E++  +L++++L +
Sbjct: 74  IAVGAVITAVDESVDATRCQGKEGCQ-----GGNRCLTHTLWRDLSERISSFLNNITLAE 128

Query: 121 LVNQQHTKE----QKHPEHRT 137
           LVN Q   E    Q +   RT
Sbjct: 129 LVNNQDILEVADRQNNDTRRT 149


>PA3815 [K] COG1959 Predicted transcriptional regulator Pae Pseudomonas
           aeruginosa
          Length = 163

 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/129 (54%), Positives = 92/129 (71%), Gaps = 5/129 (3%)

Query: 1   MIDLALRHGNGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRGPGGGYNLARKAAD 60
           M+DLAL    GPV+L+ ISERQ ISLSYLEQLF KLRR  +V SVRGPGGGY L+R  + 
Sbjct: 14  MLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRGPGGGYQLSRHMSG 73

Query: 61  VSVADIIIAVDEPLDATQCGGKENCHSVTHPGGTRCMTHDLWSTLNEKMVEYLDSVSLQD 120
           + VA +I AV+E +DAT+C G+ +CHS     G  C+TH LW  L+ ++ E+L  +SL D
Sbjct: 74  IHVAQVIDAVNESVDATRCQGQGDCHS-----GDTCLTHHLWCDLSLQIHEFLSGISLAD 128

Query: 121 LVNQQHTKE 129
           LV++Q  +E
Sbjct: 129 LVSRQEVQE 137


>HI0379 [K] COG1959 Predicted transcriptional regulator Hin Haemophilus
           influenzae
          Length = 150

 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 95/142 (66%), Gaps = 5/142 (3%)

Query: 1   MIDLALRHGNGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRGPGGGYNLARKAAD 60
           ++D+AL    GPV+L+ ISERQ ISLSYLEQLF KLR+  +V+SVRGPGGGY L   +  
Sbjct: 14  VLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRGPGGGYQLGLPSEQ 73

Query: 61  VSVADIIIAVDEPLDATQCGGKENCHSVTHPGGTRCMTHDLWSTLNEKMVEYLDSVSLQD 120
           +SV  II AV+E +  T+C G+ENC +     G  C+TH+LW  L+ ++  +L+ ++L +
Sbjct: 74  ISVGMIIAAVNENIHVTKCLGRENCKN-----GVECLTHELWEDLSLRIESFLNEITLAE 128

Query: 121 LVNQQHTKEQKHPEHRTLGTEQ 142
           LVN+++ K Q H +   L   Q
Sbjct: 129 LVNKRNVKRQSHRDFNNLLVNQ 150


>NMB1378 [K] COG1959 Predicted transcriptional regulator Nme Neisseria
           meningitidis MC58
          Length = 148

 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 93/129 (72%), Gaps = 5/129 (3%)

Query: 1   MIDLALRHGNGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRGPGGGYNLARKAAD 60
           M+DLA+    G V LSAISERQ ISLSYLEQLFGKLRR  +VES+RGPGGGY LA  AA 
Sbjct: 14  MLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRGPGGGYILAAPAAR 73

Query: 61  VSVADIIIAVDEPLDATQCGGKENCHSVTHPGGTRCMTHDLWSTLNEKMVEYLDSVSLQD 120
           +++A II A ++ LDATQCG K NCH      G  C+THDLW  LN+ + +YL SV+LQ 
Sbjct: 74  INIAQIIAAAEDRLDATQCGSKANCHH-----GAPCLTHDLWENLNKTINDYLGSVTLQS 128

Query: 121 LVNQQHTKE 129
           ++ Q++  +
Sbjct: 129 IIEQKNNGD 137