BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0048.p         (142 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2172 [GEPR] COG0477 Permeases of the major facilitator superf...   140   6e-34
CC1230 [GEPR] COG0477 Permeases of the major facilitator superfa...   128   4e-30
PA3573 [GEPR] COG0477 Permeases of the major facilitator superfa...   118   3e-27
PA4136 [GEPR] COG0477 Permeases of the major facilitator superfa...   114   5e-26
PM1533 [GEPR] COG0477 Permeases of the major facilitator superfa...   112   2e-25

>RSc2172 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 407

 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 84/117 (71%)

Query: 1   MAALTAMGALSIDMYLPSFSFIAKDLGVASNTIQLTLSTFLIGLALGQMFYGPISDRFGR 60
           + ALTA+G LS+DMYLPS   IA+DL  +S    +TL+ FL+ LA+GQ+ YGP SDRFGR
Sbjct: 25  LGALTAIGPLSVDMYLPSLPTIARDLRTSSAAAGITLTAFLVSLAIGQLIYGPASDRFGR 84

Query: 61  KPPLYFGICLYVVSSIGCTFAPNLETLLVLRFFQGLGGSSGMVIPRAVVRDKMGADG 117
           KPPLY G+ LYV +S+GC FA +   L VLR  QG GG +GMVI RA VRD+M   G
Sbjct: 85  KPPLYIGLALYVAASVGCAFATDATMLAVLRAVQGFGGCAGMVISRAAVRDRMDPAG 141


>CC1230 [GEPR] COG0477 Permeases of the major facilitator superfamily Ccr
           Caulobacter vibrioides
          Length = 405

 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 78/112 (69%)

Query: 1   MAALTAMGALSIDMYLPSFSFIAKDLGVASNTIQLTLSTFLIGLALGQMFYGPISDRFGR 60
           + ALTA   +SIDMYL S   I + L  A +  Q TL+ F  G+A+GQ+FYGP SDRFGR
Sbjct: 19  LGALTAFAPMSIDMYLSSLPSIGRTLNAAPDQTQATLAAFFAGMAIGQVFYGPASDRFGR 78

Query: 61  KPPLYFGICLYVVSSIGCTFAPNLETLLVLRFFQGLGGSSGMVIPRAVVRDK 112
           +PPL  G+ L++ +SI C  APN+ETL+  RF Q LGG +G VI RAVVRD+
Sbjct: 79  RPPLLVGVGLFIAASIVCAVAPNIETLIAARFVQALGGCAGPVIARAVVRDR 130


>PA3573 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 392

 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 77/111 (69%)

Query: 1   MAALTAMGALSIDMYLPSFSFIAKDLGVASNTIQLTLSTFLIGLALGQMFYGPISDRFGR 60
           + AL+A G L+ID YLPSF  +AK        +QL+L+ +  GL++GQ+ YGP++DR+GR
Sbjct: 9   LGALSAFGPLAIDFYLPSFPTLAKAFATDVEHVQLSLAAYFAGLSIGQLLYGPVADRYGR 68

Query: 61  KPPLYFGICLYVVSSIGCTFAPNLETLLVLRFFQGLGGSSGMVIPRAVVRD 111
           + PL  G+ ++ ++S  C  AP+LE L+  RF Q LGG +GMVI RAVVRD
Sbjct: 69  RLPLLVGVSIFTLASAACALAPSLEWLIAARFVQALGGCAGMVISRAVVRD 119


>PA4136 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 402

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 75/110 (68%)

Query: 2   AALTAMGALSIDMYLPSFSFIAKDLGVASNTIQLTLSTFLIGLALGQMFYGPISDRFGRK 61
           +AL A G LSIDMYLPS   IA DLG +   +Q ++S FL+G  +G +FYGP+SDRFGR+
Sbjct: 22  SALVAFGPLSIDMYLPSLPAIAADLGASDAQVQRSISGFLVGFCVGMLFYGPLSDRFGRR 81

Query: 62  PPLYFGICLYVVSSIGCTFAPNLETLLVLRFFQGLGGSSGMVIPRAVVRD 111
           P L  GI LY+ SS+ C  A +   L++LR  Q LGG +  V+ RA+VRD
Sbjct: 82  PVLLAGIALYLFSSLACALADSAGQLVLLRVLQALGGGAASVLARAMVRD 131


>PM1533 [GEPR] COG0477 Permeases of the major facilitator superfamily Pmu
           Pasteurella multocida
          Length = 399

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 75/112 (66%)

Query: 1   MAALTAMGALSIDMYLPSFSFIAKDLGVASNTIQLTLSTFLIGLALGQMFYGPISDRFGR 60
           +  L   G LSIDMYLPS   IAK L  +   +QL++STFL G  +G +FYGP+SD++GR
Sbjct: 18  LGTLVGFGPLSIDMYLPSLPTIAKALHTSIEWVQLSVSTFLTGFCVGMLFYGPLSDKYGR 77

Query: 61  KPPLYFGICLYVVSSIGCTFAPNLETLLVLRFFQGLGGSSGMVIPRAVVRDK 112
           +  L  G+ +Y+V+SI C+ A ++E LLV RF Q  GG  G V+ RA+VRD 
Sbjct: 78  RIILLIGMTIYIVASIACSIATSIEQLLVARFLQAFGGGVGPVLGRAIVRDS 129