BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0039.p (285 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 110 4e-24 STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 106 6e-23 PA1608 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu... 77 6e-14 RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 76 8e-14 RSp0840 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 73 9e-13 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 140/284 (49%), Gaps = 2/284 (0%) Query: 1 MKNMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQKERLASEWAAN- 59 + +MRIG RLG FALV++LL+ + +G+ RL D + +++ L+++ N Sbjct: 3 ISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNNG 62 Query: 60 IDANGVRTIAVIKSDNADHQKFFKDQMAGTVDRTSAVQKQLDELIKSAEGRKLFDSLLVQ 119 ANG+ + ++ + K+ D A + +L++L+ + +G+ LF Sbjct: 63 YKANGILSNLLLVTTPEQKTKYMSD-YAAIRQANAQAYGRLEKLLTTDQGKALFKEQFDA 121 Query: 120 RKVYNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSARVSAVAAHQRDVINRNAAIV 179 R Y K L + + A A + ++ Y V + HQ + + + Sbjct: 122 RSAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDVSEA 181 Query: 180 DEQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSAVAAGDLSTHVVVDR 239 Q + + +I + VLA L+ + ++ ITRP+ A+ AVA G+L+ + VD Sbjct: 182 AAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHLLEVDT 241 Query: 240 KDEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATGNL 283 +DEIG+LL L M +NL V +VR G DTI AS+E+A+GN+ Sbjct: 242 QDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNI 285 >STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 521 Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 150/301 (49%), Gaps = 38/301 (12%) Query: 1 MKNMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQKERLASEWAANI 60 + N++I S+L + F L + L+V+ + + ++ L D N I + +++ + Sbjct: 3 LHNIKIRSKLFMAFGLFIVLMVVSSALSLFSL-DRANTGMQNI--------ITNDYPTTV 53 Query: 61 DANGVRTIAVIKSDNADHQKFFKDQMAGTVDR----TSAVQKQLDELIK----------- 105 AN + DN + F Q +D + + QK+LDE+ + Sbjct: 54 KAN-------LLIDNFN--DFIIAQQLMLLDEEGRWSQSSQKELDEISQRITALLDELSS 104 Query: 106 ---SAEGRKLFDSLLVQRKVYNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSARVS 162 A +K+ + R+ Y + R +I++ + + AA+ + T + K Y +V Sbjct: 105 NRHDAASQKIITEIREARQQYLESRFRILQDIQSHNRQAAIQEMMTRTVQVQKVYKDKVQ 164 Query: 163 AVAAHQRDVINRNAAI-VDEQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQ 221 + A Q D NA + V+ +++ RT+LI + ++++ G + W + ITRPL AV+ Sbjct: 165 ELIAVQ-DAQMHNAGVQVEGDFKTNRTLLITLALISIAAGCVMGWYIVRSITRPLDEAVR 223 Query: 222 ATSAVAAGDLSTHVVVDRKDEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATG 281 A+A GDL+ H+ D KDE G LLQ L M LL V+EV++G+++I+TA+A+I G Sbjct: 224 FAEAIADGDLTRHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTAAAQIVAG 283 Query: 282 N 282 N Sbjct: 284 N 284 >PA1608 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas aeruginosa Length = 541 Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/294 (22%), Positives = 137/294 (46%), Gaps = 30/294 (10%) Query: 1 MKNMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQKERLASEWAANI 60 +++M I +R L FAL+ +LLV I G++ L +G +L+ ++ W ++ Sbjct: 3 LRSMPIATRAALSFALITALLV---ITGIFSLNRMG-------SLNEASSDISDNWLPSV 52 Query: 61 DANG-----------VRTIAVIKSDNADHQKFFKDQMAGT----VDRTSAVQKQLDELIK 105 + V+ V+ +D++ ++F + +M DR A Q+ LI Sbjct: 53 RESAELNVLLAELRQVQLAHVLAADDSS-KRFLESRMTEIGKELTDREGAYQR----LIS 107 Query: 106 SAEGRKLFDSLLVQRKVYNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSARVSAVA 165 A+ R +++ L R+ + ++++ E+ LL + ++ A+ Sbjct: 108 GADERSIYERYLATRQTLLQSQQTLVQMSRSKPLEETRQYTESTLLDQYRATQQQLQALI 167 Query: 166 AHQRDVINRNAAIVDEQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSA 225 ++ + DE Y S +I V ++A L V+ +W + IT+PL A++ Sbjct: 168 DFNVKGASQASHTADEVYHSAFAAVIGVLLVAGLATVVLAWLFTRSITQPLGEALRVAEV 227 Query: 226 VAAGDLSTHVVVDRKDEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIA 279 +A+GDL++ + +DE +LL L M L +T++++ S A +A+A+ E++ Sbjct: 228 IASGDLTSRIDTSGRDEPAKLLVALQGMQAQLRQTIQQIGSSATQLASAAEELS 281 >RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 60/102 (58%) Query: 181 EQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSAVAAGDLSTHVVVDRK 240 + Y R ++IA VLAL+V +W L I PL + +AAGDL+ V +DR+ Sbjct: 182 QAYARIRNLVIAAIVLALVVSAGCAWLLLRAIVGPLNATLAQFDRIAAGDLTQPVRIDRR 241 Query: 241 DEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATGN 282 DE+G LL+GL M L TVR VR G+++I A+ +IA GN Sbjct: 242 DEMGHLLEGLARMQAALTDTVRRVRHGSESIGAATKQIAAGN 283 >RSp0840 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 518 Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 2/184 (1%) Query: 100 LDELIKSAEGRKLFDSLLVQRKVYNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSA 159 L + I++ G+ LF L ++ Y LR ++I GD+ AA L TE+ Y Sbjct: 100 LQKRIRTQSGQDLFKRLQDTQERYGALRARVIAAINAGDKEAARDLLLTEMPAVQSTYFD 159 Query: 160 RVSAVAAHQRD-VINRNAAIVDEQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRR 218 + A+ A+Q +++ + R+ +L+ A+L W ++ I RPL + Sbjct: 160 ALDALVAYQTQLMVDTTGRALTASERAAILLLVMAAAAAVLAVFAGVW-ITRSIVRPLDQ 218 Query: 219 AVQATSAVAAGDLSTHVVVDRKDEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEI 278 A+ VA GDLST + DE GQL++ L M NL V+EV DTIATAS ++ Sbjct: 219 ALHLADNVAQGDLSTRIDSRAADETGQLVRALESMRANLATIVQEVHESTDTIATASGQV 278 Query: 279 ATGN 282 A G+ Sbjct: 279 AAGS 282