BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0032.p         (236 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM4573 [NU] COG3121 P pilus assembly protein, chaperone PapD St...   211   2e-54
yhcA [NU] COG3121 P pilus assembly protein, chaperone PapD Eco E...   176   3e-44
YPO0303 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp...   105   7e-23

>STM4573 [NU] COG3121 P pilus assembly protein, chaperone PapD Sty
           Salmonella typhimurium LT2
          Length = 235

 Score =  211 bits (536), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/228 (49%), Positives = 149/228 (65%), Gaps = 4/228 (1%)

Query: 8   LLFLAVACFLSNAVMPVTAYASGMLPETSVVIINEADGEASMNVKNTDANATLLYTSIQN 67
           LL L+V    S       A A+GM+PET++++I E+     MNVKNTD+N  LLYT++ +
Sbjct: 9   LLLLSVPFVFSTLFS--QANAAGMVPETTLLVIEESTHSGVMNVKNTDSNPALLYTTVVD 66

Query: 68  LPEDKENLLIVTPPVARVEPDETQLVRFILQSKEPLKTQRFKRVIFEGIPQQSKDGGVKV 127
           LP+D    L VT PV RVE  + Q +RFI++S EPL  + +KRV FEGIP +S D G+K+
Sbjct: 67  LPDDNGVKLDVTQPVVRVEAGQQQQLRFIMESTEPLTVEHYKRVTFEGIPPKSTDKGMKI 126

Query: 128 TMNVRQNLPVIIHPKGLAPNREPWKLLTWSVRNGNLV-AKNDSAYVVRLAQTVTLLPGNA 186
             N+RQ+LPV+I PK L    + WKLLTWS RNG  +  KN S YVVRLAQ +T LP   
Sbjct: 127 GFNLRQDLPVLIRPKNLPVVTDAWKLLTWS-RNGQTINVKNPSPYVVRLAQNITFLPSGG 185

Query: 187 ELDLGKTYFLPGETISVAVPATGAASTSVRLAPATVYGFSVDSYDAAL 234
           E  + KTY LPGET++V++    AA TSVR  PA+ YG  V S+ + L
Sbjct: 186 EGTIKKTYILPGETLNVSIKTPFAADTSVRFYPASRYGIEVPSFTSPL 233


>yhcA [NU] COG3121 P pilus assembly protein, chaperone PapD Eco
           Escherichia coli K12
          Length = 224

 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 129/204 (63%), Gaps = 4/204 (1%)

Query: 28  ASGMLPETSVVIINEADGEASMNVKNTDANATLLYTSIQNLPEDKENL-LIVTPPVARVE 86
           A+GM+PETSV++++E  GEAS+N+KNTD + +LLYT+I +LPE  +++ LI T PV RVE
Sbjct: 19  ATGMVPETSVLLVDEKRGEASINIKNTDDHPSLLYTTIVDLPESNKSIRLIPTQPVIRVE 78

Query: 87  PDETQLVRFILQSKEPLKTQRFKRVIFEGIPQQSKDGGVKVTMNVRQNLPVIIHPKGLAP 146
             + Q VRF+LQ+  PL+++  KRV FEGIP +  D   +VT+++RQ+LPV+IHP  L  
Sbjct: 79  AGQVQQVRFLLQATVPLQSEELKRVTFEGIPPKD-DKSSRVTVSIRQDLPVLIHPASLPE 137

Query: 147 NREPWKLLTWSVRNGNLVAKNDSAYVVRLAQTVTLLPGNAELDLGKTYFLPGETISVAVP 206
            RE WK L W      +   N S YVVR+      LP      + KTYFLP  + + A+ 
Sbjct: 138 ERETWKFLEWRKNGDQIEISNPSNYVVRMTLQFKTLPSGKTGAINKTYFLPHTSTTTAL- 196

Query: 207 ATGAASTSVRLAPATVYGFSVDSY 230
            T A  T V   PA+ YG+  + Y
Sbjct: 197 -TNATDTKVEFYPASRYGYRGNKY 219


>YPO0303 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia
           pestis
          Length = 247

 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 111/212 (52%), Gaps = 8/212 (3%)

Query: 26  AYASGMLPETSVVIINEADGEASMNVKNTDANATLLYTSIQNLP-EDKENLLIVTPPVAR 84
           +YAS  L E++ VI+ E++   S  + N  +N  LL T + +L  +     ++++PPV R
Sbjct: 43  SYASFKL-ESTTVILQESEARTSFTIDNISSNPILLVTKLTDLDGKSFSKQILISPPVTR 101

Query: 85  VEPDETQLVRFILQSKEPLKTQRFKRVIFEGIPQQSKDGGVKVTMNVRQNLPVIIHPKGL 144
           +   ++Q V F+L+    L  +   +  FEG+ Q   +  V   M +RQ +  +I P  +
Sbjct: 102 INAGQSQQVNFVLKKGSVLNNEVLLKASFEGVEQVPGNAAV---MPIRQEIGFLIQPSAV 158

Query: 145 APNREPWKLLTWSVRNGNLVAKNDSAYVVRLAQTVTLLPGNAELDLGKTYFLPGETISVA 204
              R PW+ L +S+   NLV KN   +VVRL   + L+P N  + LG  Y +P ET S  
Sbjct: 159 PQIRMPWQTLVFSISGNNLVIKNPGKHVVRLGPQIILVPSNEVVALGNPYIMP-ET-SKL 216

Query: 205 VPATGAASTSVRLAPATVYGFSVDSYDAALTR 236
            P T ++ T+V++ P + YGF        +TR
Sbjct: 217 FPIT-SSPTAVKVTPLSRYGFVQTEVTLPVTR 247