BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0029.p (402 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3387_2 [T] COG2200 FOG Rso Ralstonia solanacearum 162 1e-39 PA3947_2 [T] COG2200 FOG Pae Pseudomonas aeruginosa 144 3e-34 VC0653_3 [T] COG2200 FOG Vch Vibrio cholerae 135 2e-31 VC1652_2 [T] COG2200 FOG Vch Vibrio cholerae 134 3e-31 PA0575_4 [T] COG2200 FOG Pae Pseudomonas aeruginosa 134 3e-31 >RSc3387_2 [T] COG2200 FOG Rso Ralstonia solanacearum Length = 260 Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 140/260 (53%), Gaps = 2/260 (0%) Query: 135 SATADGAIGDDDILRAICDT-SEFEVWYQPQISLKTKAIIGADAMVRWSHPKFSYLAPEQ 193 SA A DD++ + DT + EV QPQ L T ++GA+A+ RW HP + P Sbjct: 1 SAVRPPAFSDDELAALVHDTPGQIEVVLQPQHDLVTDRVVGAEALCRWLHPVHGRVLPTA 60 Query: 194 FMTLIERQGLGLMLFYRTVNHVLKTQQKLEHIGCSLPICIKASASTLEIPEIADYLHERS 253 F+ +E GL LF+ + H + Q+ L +LPI + ASA TL D + Sbjct: 61 FVPRLEALGLADALFFHVLGHCARVQRALAAQSIALPIGVNASAQTLSREGAIDRIATAM 120 Query: 254 QRYGISSHLVTVGISEEEPSQHALKLAASLNRLRLRGFGLSIDDFGSGISTMKLLSQMPF 313 + I + + +S+E P +LA +L+RLR G GL+IDDFG G + +KLL+ +PF Sbjct: 121 RDAAIDPARIVIELSDEAPVAETARLAVALHRLRQFGHGLAIDDFGVGFAVLKLLADLPF 180 Query: 314 TEIRIDRHFVRQFLRQPQCRVIVESIIGIAKRLQLAVIAEGIENARQMEVLAAMGCGRGQ 373 T ++IDR Q ++ ++I +A L+L +AEG+E Q L A+GC GQ Sbjct: 181 TILKIDRALTEAVSLSSQRGIVCRTMIELAGALRLQCVAEGVETDAQRRALLALGCATGQ 240 Query: 374 GFI-AAPMRQDDFLSKVGAN 392 G++ AAP+ FL++V A+ Sbjct: 241 GYLWAAPLSTTAFLARVQAD 260 >PA3947_2 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 248 Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 134/242 (55%), Gaps = 2/242 (0%) Query: 146 DILRAICDTSEFEVWYQPQISLKTKAIIGADAMVRWSHPKFSYLAPEQFMTLIERQGLGL 205 D++R + D EFE +YQP+++L +IGA+ + RW+HP L P F+ ++E L Sbjct: 2 DVVRGL-DNGEFEAYYQPKVALDGGGLIGAEVLARWNHPHLGVLPPSHFLYVMETYNLVD 60 Query: 206 MLFYRTVNHVLKTQQKLEHIGCSLPICIKASASTLEIPEIADYLHERSQRYGISSHLVTV 265 LF++ + L T++KL +G + + S L +A+ + + + V Sbjct: 61 KLFWQLFSQGLATRRKLAQLGQPINLAFNVHPSQLGSRALAENISALLTEFHLPPSSVMF 120 Query: 266 GISEEEPSQHALKLAASLNRLRLRGFGLSIDDFGSGISTMKLLSQMPFTEIRIDRHFVRQ 325 I+E +L RLR+ G GL++DDFG+G S++ L + PF++I++DR FV++ Sbjct: 121 EITETGLISAPASSLENLVRLRIMGCGLAMDDFGAGYSSLDRLCEFPFSQIKLDRTFVQK 180 Query: 326 FLRQPQCRVIVESIIGIAKRLQLAVIAEGIENARQMEVLAAMGCGRGQGFI-AAPMRQDD 384 QP+ ++ S++ +A+ L ++++ EG+E+ Q L +GC QG++ A PM + Sbjct: 181 MKTQPRSCAVISSVVALAQALGISLVVEGVESDEQRVRLIELGCSIAQGYLFARPMPEQH 240 Query: 385 FL 386 FL Sbjct: 241 FL 242 >VC0653_3 [T] COG2200 FOG Vch Vibrio cholerae Length = 269 Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 9/224 (4%) Query: 157 FEVWYQPQISLKTKAIIGADAMVRWSHPKFSYLAPEQFMTLIERQGLGLMLFYRTVNHVL 216 EVWYQP+++ + +I GA+A+VRW HP Y++P F+ + E+ GL L + V Sbjct: 25 LEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVF 84 Query: 217 KTQQKLEHIGCSLP--ICIKASASTLEIPEIADYLHERSQRYGISSHLVTVGISEE---E 271 T ++ + G LP + I S P++ DYL + + G+ + +T ++E Sbjct: 85 ATVKRWKLQGI-LPGRVAINISPEQFGNPQLIDYLEKLLRTTGLDPNNITFELTESVVMS 143 Query: 272 PSQHALKLAASLNRLRLRGFGLSIDDFGSGISTMKLLSQMPFTEIRIDRHFVRQFLRQPQ 331 S+H ++ LN ++ GF LSIDDFG+G S++ L++ P E++IDR F+ P+ Sbjct: 144 DSEHTQQM---LNAIKKLGFTLSIDDFGTGYSSLAYLARFPIDELKIDRAFISNIDTLPK 200 Query: 332 CRVIVESIIGIAKRLQLAVIAEGIENARQMEVLAAMGCGRGQGF 375 ++E+II + + L L V+AEG+E +Q +L+ + C QGF Sbjct: 201 QLTVIENIINLGRSLNLTVVAEGVETQQQATLLSNLNCHSIQGF 244 >VC1652_2 [T] COG2200 FOG Vch Vibrio cholerae Length = 258 Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 145 DDILRAICDTSEFEVWYQPQISLKTKAIIGADAMVRWSHPKFSYLAPEQFMTLIERQGLG 204 D+I +A F +YQPQ ++ A++G +A+VR+ HP L+P F+ LIE+ GL Sbjct: 4 DEIEQAFLHDHIFN-YYQPQFDFRSGAMVGVEALVRYEHPTHGMLSPAVFLPLIEQCGLH 62 Query: 205 LMLFYRTVNHVLKTQQKLEHIGCSLPICIKASASTLEIPEIADYLHERSQRYGISSHLVT 264 LF + K+ L IG L + + S L+ I D + +RYG + +T Sbjct: 63 EKLFLTVLE---KSVSALASIGADLQLSVNISQRNLQ-HSICDPILAICERYGFPASKLT 118 Query: 265 VGISEEEPSQHALKLAASLNRLRLRGFGLSIDDFGSGISTMKLLSQMPFTEIRIDRHFVR 324 + ++E E A+L RLR+ G GLSIDDFG+G +++ L+Q+PFTE++IDR FV Sbjct: 119 LEMTEHEVYNGTPTSLANLARLRMYGVGLSIDDFGTGYASLGQLAQLPFTELKIDRSFVH 178 Query: 325 QFLRQPQCRVIVESIIGIAKRLQLAVIAEGIENARQMEVLAAMGCGRGQGFIAA-PM 380 + + + + +A+ L L + EG+EN + L +G QG+ AA PM Sbjct: 179 DLATNYKHQQLTNMCLLLAQSLGLHCVVEGVENEETWQYLRQLGVDTCQGYYAAKPM 235 >PA0575_4 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 267 Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 133/243 (54%), Gaps = 2/243 (0%) Query: 148 LRAICDTSEFEVWYQPQISLKTKAIIGADAMVRWSHPKFSYLAPEQFMTLIERQGLGLML 207 LR + E +++YQP++SL++ ++GA+A+VRW HP F ++PE+F+ L E GL L L Sbjct: 9 LRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISPERFIPLAEDCGLILPL 68 Query: 208 FYRTVNHVLKTQQKLEHIGCSL-PICIKASASTLEIPEIADYLHERSQRYGISSHLVTVG 266 + H + + + + P+ + + + L P++ + L + ++ G+ + + Sbjct: 69 GDWVLEHACQQMGEWQKLHAPFGPLSVNLAGAQLGQPQLIERLEQLLEQSGLEPSRLQLE 128 Query: 267 ISEEEPSQHALKLAASLNRLRLRGFGLSIDDFGSGISTMKLLSQMPFTEIRIDRHFVRQF 326 I+E + A L+ L+ G L+IDDFG+G S++ L ++P ++ID+ F+R Sbjct: 129 ITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGL 188 Query: 327 LRQPQCRVIVESIIGIAKRLQLAVIAEGIENARQMEVLAAMGCGRGQGFI-AAPMRQDDF 385 P I +II + + +QL VIAEG+E Q L GC + QGF+ + P+ + F Sbjct: 189 PDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGCEQIQGFVLSPPLPAELF 248 Query: 386 LSK 388 SK Sbjct: 249 ASK 251