BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0028.p (228 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3714 [TK] COG2197 Response regulator containing a CheY-like re... 117 3e-26 RSp1621 [TK] COG2197 Response regulator containing a CheY-like r... 110 3e-24 YPO4012 [TK] COG2197 Response regulator containing a CheY-like r... 110 4e-24 mll4697 [TK] COG2197 Response regulator containing a CheY-like r... 110 4e-24 YPO1218 [TK] COG2197 Response regulator containing a CheY-like r... 108 8e-24 >PA3714 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 213 Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 116/210 (55%), Gaps = 10/210 (4%) Query: 11 RIALLDDHAVVRHGLAARLTEESDFEVVGAYAASKDMMSALRALPADILLIDYSL-GAND 69 R+ L+DDHA+ G+ L+ D +V + +++ L A P D+L+ D + G+ Sbjct: 4 RVILVDDHALTLIGMRYLLSAYDDLRIVAQAQDADGLLAQLEAHPCDLLITDLMMPGSQQ 63 Query: 70 IDGLNLIRALKVRFPDSKILVSSSHYNPATVALAMRAGARGFVGKEQELSELIAAVRSVA 129 DGL L++ ++ R+PD I+V + NPA V+ ++ G G V K L +L A+R Sbjct: 64 ADGLRLVQKVRRRYPDLPIIVVTMLGNPALVSSLLKLGIHGLVSKRGMLDDLPKAIRHA- 122 Query: 130 VGRVHLNPFMAAEISSMLSSNGSDEESPNGDSLTDNVELSPREREVLRCCLEGLSVTQIA 189 GR PF++ I+ +L E+ +G L +L+PRE EVLR GL+V +IA Sbjct: 123 -GR---RPFISRSIAHLLEVG----EAEHGKPLASLEQLTPREVEVLRLYGSGLAVGEIA 174 Query: 190 EKFARSVKTISGQKQAAFRKLGVRNDNELF 219 + RS +TIS QK +A RKLG+ ++ LF Sbjct: 175 IRLCRSKQTISAQKSSAMRKLGLDSNAGLF 204 >RSp1621 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 219 Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 121/219 (55%), Gaps = 13/219 (5%) Query: 10 IRIALLDDHAVVRHGLAARLTEESDFEVVGAYAASKDMMSALRALPADILLIDYSLGAN- 68 I++ + DDH +V G + L + D EV+ + ++ L P D+LL DY ++ Sbjct: 4 IKVGIADDHPIVLLGATSMLKDHPDIEVLFTCETIEQLLKQLAEHPVDVLLCDYEFESDP 63 Query: 69 DIDGLNLIRALKVRFPDSKILVSSSHYNPATVALAMRAGARGFVGKEQ-ELSELIAAVRS 127 DGL+L++ L+ PD++IL+ S+H P+ V+ + GA GF+GK + + L AAVR Sbjct: 64 QADGLHLLQRLRRLVPDTRILLLSAHSTPSIVSATLGLGASGFIGKSRADFGNLAAAVRK 123 Query: 128 VAVGRVHL-NPFMAAEISSMLSSNGSDEESPNGDSLTDNVELSPREREVLRCCLEGLSVT 186 VA G +++ AA +S+ +G + LS RE V + +GL++ Sbjct: 124 VAGGSLYVPGSLSAALLSARYGKHG----------MVGVEALSTREVIVAQMTADGLTIG 173 Query: 187 QIAEKFARSVKTISGQKQAAFRKLGVRNDNELFKIQHQL 225 +IA++ RS KTIS QK AA +KLGV+ND EL + +L Sbjct: 174 EIADRLKRSPKTISNQKVAAMKKLGVKNDVELAAVLREL 212 >YPO4012 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Ype Yersinia pestis Length = 196 Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 112/210 (53%), Gaps = 22/210 (10%) Query: 11 RIALLDDHAVVRHGLAARLTEESDFEVVGAYAASKDMMSALRALPADILLIDYSLGANDI 70 R+ +DDH +VR G A L+ E D +VVG ++++K + L L A+I + D S+ D Sbjct: 4 RVVFIDDHDIVRSGFAQLLSLEEDIQVVGEFSSAKQARAGLPGLQANICICDISM--PDE 61 Query: 71 DGLNLIRALKVRFPDSKILVSSSHYNPATVALAMRAGARGFVGKEQELSELIAAVRSVAV 130 +GL+L++ L +++ S H +PA V A+ GARGF+ K + +LI+AVR+V Sbjct: 62 NGLDLLKGLPSGM---GVIMLSMHDSPALVETALERGARGFLSKRCKPEDLISAVRTVGS 118 Query: 131 GRVHLNPFMAAEISSMLSSNGSDEESPNGDSLTDNVELSPREREVLRCCLEGLSVTQIAE 190 G V+L P EI+ L+ D L+ RERE+ EG+ V +IAE Sbjct: 119 GGVYLMP----EIAQQLARVAVD-------------PLTRREREIAVLLAEGMEVREIAE 161 Query: 191 KFARSVKTISGQKQAAFRKLGVRNDNELFK 220 S KT+ + F KLG+ N+ EL K Sbjct: 162 SLGLSPKTVHVHRANLFAKLGISNNVELAK 191 >mll4697 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Mlo Mesorhizobium loti Length = 215 Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 122/218 (55%), Gaps = 13/218 (5%) Query: 10 IRIALLDDHAVVRHGLAARLTEESDFEVVGAYAASKDMMSALRALPADILLIDYSLGAND 69 I+I + DDH +VR G+ A L + +++ V G + + R A I+++DYSL Sbjct: 6 IKIVIADDHPIVRSGIRAVLEQRAEWWVCGEADNGETAVRLAREHAAKIVILDYSLPV-- 63 Query: 70 IDGLNLIRALKVRFPDSKILVSSSHYNPATVALAMRAGARGFVGKEQELSELIAAVRSVA 129 ++GL R ++ P++++L+ + H + + + +RAGARG++ K ++ SEL+AAV ++ Sbjct: 64 LNGLEATRIIRRTMPETEVLIYTMHEDESLIRETLRAGARGYLLKIEDDSELVAAVAALI 123 Query: 130 VGRVHLNPFMAAEISSMLSSNGSDEESPNGDSLTDNVELSPREREVLRCCLEGLSVTQIA 189 G+ + +P ++ + SD S N L+ REREV+R EG S +IA Sbjct: 124 RGQTYFSPRVSECVLQDFLDGQSDVTSRN---------LTNREREVVRFVSEGESNKRIA 174 Query: 190 EKFARSVKTISGQKQAAFRKLGVRNDNEL--FKIQHQL 225 + SVKT+ + A RKLG+RN +L + I+++L Sbjct: 175 ARLGVSVKTVDSHRTTAMRKLGLRNAVDLVRYAIRNKL 212 >YPO1218 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Ype Yersinia pestis Length = 217 Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 13/207 (6%) Query: 10 IRIALLDDHAVVRHGLAARLTEESDFEVVGAYAASKDMMSALRALPADILLIDYSLGAND 69 + + + DDH +V G+ L + VVG + S +++ L L A++L+ D S+ + Sbjct: 4 LNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLSKLDANVLITDLSMPGDK 63 Query: 70 I-DGLNLIRALKVRFPDSKILVSSSHYNPATVALAMRAGARGFVGKEQELSELIAAVRSV 128 DG+ LI+ +K +PD I+V + + NPA ++ + G V K+ ++L A+ ++ Sbjct: 64 YGDGITLIKYIKRHYPDLAIIVLTMNNNPAILSSVLDLDIDGIVLKQGAPADLPKALAAL 123 Query: 129 AVGRVHLNPFMAAEISSMLSSNGSDEESPNGDSLTDNVELSPREREVLRCCLEGLSVTQI 188 G+ P A++ +S+NG GD LSP+E EVLR EG VT+I Sbjct: 124 QKGK-KFTPESVAKLLEKISANGY------GDK-----RLSPKESEVLRLFAEGFLVTEI 171 Query: 189 AEKFARSVKTISGQKQAAFRKLGVRND 215 A K RS+KTIS QK++A KLGV ND Sbjct: 172 ARKLNRSIKTISSQKKSAMLKLGVDND 198