BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0005.p (257 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1593 [L] COG0708 Exonuclease III Rso Ralstonia solanacearum 333 3e-91 XF1933 [L] COG0708 Exonuclease III Xfa Xylella fastidiosa 9a5c 266 5e-71 all5306 [L] COG0708 Exonuclease III Nos Nostoc sp. PCC 7120 255 5e-68 sll1854 [L] COG0708 Exonuclease III Syn Synechocystis 255 8e-68 NMB0399 [L] COG0708 Exonuclease III Nme Neisseria meningitidis MC58 236 5e-62 >RSc1593 [L] COG0708 Exonuclease III Rso Ralstonia solanacearum Length = 269 Score = 333 bits (853), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 165/265 (62%), Positives = 192/265 (72%), Gaps = 13/265 (4%) Query: 3 KIATWNVNSLKVRLPQVLQWLGD-----NPVDVLCLQETKLTDDKFPQAEINAAGYEVVF 57 ++ATWNVNSLKVRLP VLQWLG+ P+D+LCLQE KL DD++P AE+ AAGY +F Sbjct: 2 RVATWNVNSLKVRLPHVLQWLGEREADATPIDLLCLQELKLPDDRYPLAELEAAGYASLF 61 Query: 58 SGQKTYNGVAILSRHPIA----DVVKNNPLFEDEQQRIIAATIE----GVRYVCAYIPNG 109 +GQKTYNGVAIL+R DVV+N P F DEQQR++AAT + VR + AY PNG Sbjct: 62 TGQKTYNGVAILARKAAMPEGRDVVRNIPDFADEQQRVVAATYDVAGGPVRVISAYFPNG 121 Query: 110 QAPDSEKYQYKLKWLAALHTWLAQEQQQHEKLALLGDYNIAPEDRDVHDPAAWVGQNLVS 169 QA DS+K YK++WLAAL WL E H +L LLGD+NIAP+DRDVHDP W G NLVS Sbjct: 122 QALDSDKMVYKMRWLAALQDWLQAEMAAHPRLMLLGDFNIAPDDRDVHDPKKWEGMNLVS 181 Query: 170 EPERAAFFHLEKMGFTDAFRKFEQPEKLFSWWDYRQMGFRLNRGLRIDHILLTAPLAAQC 229 ERAAF LE G DAFR FEQ +KLFSWWDYR FR N GLRIDHILL+ LA C Sbjct: 182 PEERAAFRALESAGLVDAFRMFEQEDKLFSWWDYRLFAFRRNAGLRIDHILLSPNLARLC 241 Query: 230 TACVIDKVPRKWEQPSDHAPVIATL 254 +C ID+VPR WEQPSDH PV+A L Sbjct: 242 ESCHIDRVPRGWEQPSDHTPVVAAL 266 >XF1933 [L] COG0708 Exonuclease III Xfa Xylella fastidiosa 9a5c Length = 264 Score = 266 bits (679), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 136/248 (54%), Positives = 171/248 (68%), Gaps = 1/248 (0%) Query: 3 KIATWNVNSLKVRLPQVLQWLGDNPVDVLCLQETKLTDDKFPQAEINAAGYEVVFSGQKT 62 +IA+WNVNSL VRL Q+ QWL + DVL LQETKL D +FP+A + A GY V++GQKT Sbjct: 4 RIASWNVNSLNVRLSQLQQWLVEAAPDVLGLQETKLEDHQFPEAALAALGYVSVYAGQKT 63 Query: 63 YNGVAILSRHPIADVVKNNPLFEDEQQRIIAATIEGVRYVCAYIPNGQAPDSEKYQYKLK 122 YNGVA+L+R + DV P FED Q+R+IAAT++G+R V Y+ NGQ +EKY YKL Sbjct: 64 YNGVALLARVALEDVQVGIPGFEDVQRRVIAATVDGIRVVNLYVVNGQEVGTEKYAYKLS 123 Query: 123 WLAALHTWLAQEQQQHEKLALLGDYNIAPEDRDVHDPAAWVGQN-LVSEPERAAFFHLEK 181 WL A++ WLA+E Q++ +L +LGD+NIAP+ RDV+DP W + L S ER A L Sbjct: 124 WLDAVYHWLAEELQRYPRLVVLGDFNIAPDARDVYDPQVWNEDHILTSTTERVALGKLLG 183 Query: 182 MGFTDAFRKFEQPEKLFSWWDYRQMGFRLNRGLRIDHILLTAPLAAQCTACVIDKVPRKW 241 +G D FR Q +FSWWDYRQ FR NRGLRID L++ L AQ A ID VPR W Sbjct: 184 LGLHDGFRLHHQDTGIFSWWDYRQASFRRNRGLRIDLTLVSEALRAQVVASGIDCVPRGW 243 Query: 242 EQPSDHAP 249 E+PSDHAP Sbjct: 244 ERPSDHAP 251 >all5306 [L] COG0708 Exonuclease III Nos Nostoc sp. PCC 7120 Length = 260 Score = 255 bits (652), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 129/259 (49%), Positives = 159/259 (61%), Gaps = 7/259 (2%) Query: 3 KIATWNVNSLKVRLPQVLQWLGDNPVDVLCLQETKLTDDKFPQAEINAAGYEVVFSGQKT 62 KIATWNVNS++ RL QVL WL NPVDVLCLQETK+ DD FP++ GY SGQK Sbjct: 2 KIATWNVNSIRTRLEQVLDWLKQNPVDVLCLQETKVIDDDFPRSPFENLGYHSYISGQKA 61 Query: 63 YNGVAILSRHPIADVVKN-NPLFED------EQQRIIAATIEGVRYVCAYIPNGQAPDSE 115 YNGVA++S+ P+ DV P+ D EQ+R+I I+GVR V Y+PNG A SE Sbjct: 62 YNGVALISQQPLTDVTTGFTPILPDIEPIWDEQKRVITGVIDGVRIVNLYVPNGSAIASE 121 Query: 116 KYQYKLKWLAALHTWLAQEQQQHEKLALLGDYNIAPEDRDVHDPAAWVGQNLVSEPERAA 175 KY+YKL+WL L +L + + GD+NIA ED+D+H+ + S ER A Sbjct: 122 KYEYKLRWLTVLREYLRSLLLLQPAICICGDFNIALEDKDIHEKVKAENHIMASLAERQA 181 Query: 176 FFHLEKMGFTDAFRKFEQPEKLFSWWDYRQMGFRLNRGLRIDHILLTAPLAAQCTACVID 235 + ++GF DAFRKF FSWWDYR FR N+G RIDH LT L AQ +C ID Sbjct: 182 LRDVLELGFADAFRKFTTEGGHFSWWDYRAASFRRNQGWRIDHHYLTPVLYAQAKSCTID 241 Query: 236 KVPRKWEQPSDHAPVIATL 254 PRK QPSDH PVI + Sbjct: 242 VSPRKLTQPSDHTPVIVEI 260 >sll1854 [L] COG0708 Exonuclease III Syn Synechocystis Length = 275 Score = 255 bits (651), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 132/262 (50%), Positives = 163/262 (62%), Gaps = 10/262 (3%) Query: 4 IATWNVNSLKVRLPQVLQWLGDNPVDVLCLQETKLTDDKFPQAEINAAGYEVVFSGQKTY 63 IA+WNVNS++ R +L WLG NPVDVLCLQETK+ D+ FP+ AGY SGQK+Y Sbjct: 13 IASWNVNSVRSRQQHILDWLGTNPVDVLCLQETKVVDEDFPRQPFEEAGYHCHISGQKSY 72 Query: 64 NGVAILSRHPIADV-VKNNPLFE-------DEQQRIIAATIEGVRYVCAYIPNGQAPDSE 115 NGVAI SR P+ DV + L E DEQ+R+I+ +GVR V Y+PNG A DSE Sbjct: 73 NGVAIFSREPLQDVKIGFAALVEPALTGDLDEQKRVISGVYDGVRIVNLYVPNGSALDSE 132 Query: 116 KYQYKLKWLAALHTWLAQ-EQQQHEKLALLGDYNIAPEDRDVHDPAAWVGQNLVSEPERA 174 KY YKL+WL L T+L Q + + + GD+NIAPEDRD+HDP + + ER Sbjct: 133 KYLYKLRWLNLLQTYLEQLRRSDTPEFLVCGDFNIAPEDRDIHDPVGRENHIMATAMERE 192 Query: 175 AFFH-LEKMGFTDAFRKFEQPEKLFSWWDYRQMGFRLNRGLRIDHILLTAPLAAQCTACV 233 A L DAFRKF + +SWWDYR GF NRG RIDH LT L Q C Sbjct: 193 ALTEVLAIANLQDAFRKFTEETGHYSWWDYRTRGFSRNRGWRIDHHYLTPQLYDQAQKCW 252 Query: 234 IDKVPRKWEQPSDHAPVIATLD 255 ID+ PR WE+PSDHAPV+ T++ Sbjct: 253 IDREPRGWEKPSDHAPVVVTIN 274 >NMB0399 [L] COG0708 Exonuclease III Nme Neisseria meningitidis MC58 Length = 256 Score = 236 bits (601), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 126/255 (49%), Positives = 160/255 (62%), Gaps = 1/255 (0%) Query: 3 KIATWNVNSLKVRLPQVLQWLGDNPVDVLCLQETKLTDDKFPQAEINAAGYEVVFSGQKT 62 KI TWNVNSL VRLPQV L DNP D+L LQE KL DKFP A + G+ V+SGQKT Sbjct: 2 KITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQKT 61 Query: 63 YNGVAILSRHPIADVVKNNP-LFEDEQQRIIAATIEGVRYVCAYIPNGQAPDSEKYQYKL 121 YNGVAI+SR DV P L +D Q+R+IAAT+ GVR + Y NG+A DS K++YK Sbjct: 62 YNGVAIVSRSVPQDVHFGLPALPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKYKE 121 Query: 122 KWLAALHTWLAQEQQQHEKLALLGDYNIAPEDRDVHDPAAWVGQNLVSEPERAAFFHLEK 181 +W AAL ++ E +H KL LLGD+NIAP D D +DP W + S ER F +L Sbjct: 122 QWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNLLD 181 Query: 182 MGFTDAFRKFEQPEKLFSWWDYRQMGFRLNRGLRIDHILLTAPLAAQCTACVIDKVPRKW 241 +G TD+ R+ ++W+DYR F+ GLRIDHIL++ +AA +D R Sbjct: 182 LGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETRAL 241 Query: 242 EQPSDHAPVIATLDF 256 E+PSDHAPV A D+ Sbjct: 242 ERPSDHAPVTAEFDW 256