BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0172.p         (84 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0933 [J] COG0228 Ribosomal protein S16 Rso Ralstonia solanace...   143   1e-34
NMB0592 [J] COG0228 Ribosomal protein S16 Nme Neisseria meningit...   114   5e-26
NMA0795 [J] COG0228 Ribosomal protein S16 NmA Neisseria meningit...   114   5e-26
YPO3295 [J] COG0228 Ribosomal protein S16 Ype Yersinia pestis         112   2e-25
STM2676 [J] COG0228 Ribosomal protein S16 Sty Salmonella typhimu...   108   3e-24

>RSc0933 [J] COG0228 Ribosomal protein S16 Rso Ralstonia solanacearum
          Length = 84

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/84 (80%), Positives = 76/84 (90%)

Query: 1  MVVIRLARGGAKKRPFFNIVATDSRNRRDGRFIERLGFYNPVASGKEESFRIAQDRLAHW 60
          MVVIRLARGG+K RPFFNIVATDSRNRRDGRFIER+GFYNP+A+  EE  RIAQDRL++W
Sbjct: 1  MVVIRLARGGSKNRPFFNIVATDSRNRRDGRFIERVGFYNPLATEGEEGLRIAQDRLSYW 60

Query: 61 EGVGAQLSPTVARLVSEAGKKAAA 84
          +GVGAQLSPTVARLV +  KKAAA
Sbjct: 61 QGVGAQLSPTVARLVKQGAKKAAA 84


>NMB0592 [J] COG0228 Ribosomal protein S16 Nme Neisseria meningitidis MC58
          Length = 81

 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 68/83 (81%), Gaps = 2/83 (2%)

Query: 1  MVVIRLARGGAKKRPFFNIVATDSRNRRDGRFIERLGFYNPVASGKEESFRIAQDRLAHW 60
          MVVIRLARGG+K RPF+N++ TDSR+RRDGRFIER+GFYNPVA+ K+E  R+  DRL HW
Sbjct: 1  MVVIRLARGGSKHRPFYNVIVTDSRSRRDGRFIERVGFYNPVANEKQERVRLNADRLNHW 60

Query: 61 EGVGAQLSPTVARLVSEAGKKAA 83
             GAQ+S +VA+L+ E  +KAA
Sbjct: 61 IAQGAQVSDSVAKLIKE--QKAA 81


>NMA0795 [J] COG0228 Ribosomal protein S16 NmA Neisseria meningitidis
          Z2491
          Length = 81

 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 68/83 (81%), Gaps = 2/83 (2%)

Query: 1  MVVIRLARGGAKKRPFFNIVATDSRNRRDGRFIERLGFYNPVASGKEESFRIAQDRLAHW 60
          MVVIRLARGG+K RPF+N++ TDSR+RRDGRFIER+GFYNPVA+ K+E  R+  DRL HW
Sbjct: 1  MVVIRLARGGSKHRPFYNVIVTDSRSRRDGRFIERVGFYNPVANEKQERVRLNADRLNHW 60

Query: 61 EGVGAQLSPTVARLVSEAGKKAA 83
             GAQ+S +VA+L+ E  +KAA
Sbjct: 61 IAQGAQVSDSVAKLIKE--QKAA 81


>YPO3295 [J] COG0228 Ribosomal protein S16 Ype Yersinia pestis
          Length = 82

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 65/82 (79%)

Query: 1  MVVIRLARGGAKKRPFFNIVATDSRNRRDGRFIERLGFYNPVASGKEESFRIAQDRLAHW 60
          MV IRLARGGAKKRPF+ +V TDSRN RDGRFIER+GF+NP+ASG+ E+ R+  DR+ HW
Sbjct: 1  MVTIRLARGGAKKRPFYQVVVTDSRNARDGRFIERVGFFNPIASGQAEALRLDLDRIEHW 60

Query: 61 EGVGAQLSPTVARLVSEAGKKA 82
           G+GA +S  V+ L+ +A K A
Sbjct: 61 IGLGATVSDRVSVLIKDAKKAA 82


>STM2676 [J] COG0228 Ribosomal protein S16 Sty Salmonella typhimurium LT2
          Length = 82

 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 62/82 (75%)

Query: 1  MVVIRLARGGAKKRPFFNIVATDSRNRRDGRFIERLGFYNPVASGKEESFRIAQDRLAHW 60
          MV IRLAR GAKKRPF+ +V TDSRN R+GRFIER+GF+NP+AS KEE  R+  DR+AHW
Sbjct: 1  MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHW 60

Query: 61 EGVGAQLSPTVARLVSEAGKKA 82
           G GA +S  VA L+ E  K A
Sbjct: 61 VGQGATISDRVAALIKEVKKAA 82