BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0169.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0936 [J] COG0335 Ribosomal protein L19 Rso Ralstonia solanace...   203   9e-53
NMA0792 [J] COG0335 Ribosomal protein L19 NmA Neisseria meningit...   193   1e-49
NMB0589 [J] COG0335 Ribosomal protein L19 Nme Neisseria meningit...   192   2e-49
PA3742 [J] COG0335 Ribosomal protein L19 Pae Pseudomonas aeruginosa   159   1e-39
VC0564 [J] COG0335 Ribosomal protein L19 Vch Vibrio cholerae          157   5e-39

>RSc0936 [J] COG0335 Ribosomal protein L19 Rso Ralstonia solanacearum
          Length = 128

 Score =  203 bits (516), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 104/128 (81%), Positives = 114/128 (89%), Gaps = 2/128 (1%)

Query: 1   MDLIQQLEQEEIARLAKN--IPEFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLN 58
           M+LI+Q+EQEEI RL  N  IP FAPGDTVIV+VNVVEG RKR QAYEGVVI++RNRGLN
Sbjct: 1   MNLIEQIEQEEIKRLTANKTIPPFAPGDTVIVNVNVVEGNRKRVQAYEGVVIAKRNRGLN 60

Query: 59  SNFIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPN 118
           S+FIVRKISSGEGVERTFQLYSPL+ASIEVKRRGDVRRAKLYYLRERSGKSARIKEKL  
Sbjct: 61  SSFIVRKISSGEGVERTFQLYSPLLASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLSF 120

Query: 119 RRGTAKAE 126
           +R    A+
Sbjct: 121 KRKEVAAQ 128


>NMA0792 [J] COG0335 Ribosomal protein L19 NmA Neisseria meningitidis Z2491
          Length = 121

 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/121 (85%), Positives = 111/121 (91%)

Query: 1   MDLIQQLEQEEIARLAKNIPEFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60
           M+LIQQLEQEEIARL K+IPEFAPGDTV+VSV VVEGTR R QAYEGVVI+RRNRGLNSN
Sbjct: 1   MNLIQQLEQEEIARLNKDIPEFAPGDTVVVSVRVVEGTRSRLQAYEGVVIARRNRGLNSN 60

Query: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPNRR 120
           FIVRKISSGEGVERTFQLYSP +  IEVKRRGDVRRAKLYYLR  +GK+ARIKEKLP R+
Sbjct: 61  FIVRKISSGEGVERTFQLYSPTVEKIEVKRRGDVRRAKLYYLRGLTGKAARIKEKLPARK 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>NMB0589 [J] COG0335 Ribosomal protein L19 Nme Neisseria meningitidis MC58
          Length = 121

 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/121 (85%), Positives = 110/121 (90%)

Query: 1   MDLIQQLEQEEIARLAKNIPEFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60
           M+LIQQLEQEEIARL K IPEFAPGDTV+VSV VVEGTR R QAYEGVVI+RRNRGLNSN
Sbjct: 1   MNLIQQLEQEEIARLNKEIPEFAPGDTVVVSVRVVEGTRSRLQAYEGVVIARRNRGLNSN 60

Query: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPNRR 120
           FIVRKISSGEGVERTFQLYSP +  IEVKRRGDVRRAKLYYLR  +GK+ARIKEKLP R+
Sbjct: 61  FIVRKISSGEGVERTFQLYSPTVEKIEVKRRGDVRRAKLYYLRGLTGKAARIKEKLPARK 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>PA3742 [J] COG0335 Ribosomal protein L19 Pae Pseudomonas aeruginosa
          Length = 116

 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/114 (70%), Positives = 94/114 (82%), Gaps = 3/114 (2%)

Query: 3   LIQQLEQEEIARLAKNIPEFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSNFI 62
           +IQQ+E E+   + K IP FAPGDTVIV V V EG R+R QA+EGVVI++RNRGLNS F 
Sbjct: 5   IIQQIEAEQ---MNKEIPAFAPGDTVIVQVKVKEGDRQRLQAFEGVVIAKRNRGLNSAFT 61

Query: 63  VRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKL 116
           VRKIS+G GVERTFQ YSP++ S+ VKRRGDVR+AKLYYLR  SGK+ARIKEKL
Sbjct: 62  VRKISNGVGVERTFQTYSPIVDSLSVKRRGDVRKAKLYYLRALSGKAARIKEKL 115


>VC0564 [J] COG0335 Ribosomal protein L19 Vch Vibrio cholerae
          Length = 117

 Score =  157 bits (397), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 77/118 (65%), Positives = 99/118 (83%), Gaps = 3/118 (2%)

Query: 2   DLIQQLEQEEIARLAKNIPEFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSNF 61
           ++I+ LEQE+   + +++P+FAPGDTV+V V V EG R+R QA+EG+VI+ RNRGL+S F
Sbjct: 3   NIIKALEQEQ---MKQDLPQFAPGDTVVVQVKVKEGDRERLQAFEGIVIAIRNRGLHSAF 59

Query: 62  IVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPNR 119
            VRKIS+GEGVERTFQ +SP++ SIEVKRRG VRRAKLYYLR+ SGK+ARIKEKL  +
Sbjct: 60  TVRKISNGEGVERTFQTHSPVVDSIEVKRRGAVRRAKLYYLRDLSGKAARIKEKLAKK 117