BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0156.p (245 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4101 [TK] COG0745 Response regulators consisting of a CheY-lik... 293 3e-79 SMb20219 [TK] COG0745 Response regulators consisting of a CheY-l... 287 2e-77 mlr2740 [TK] COG0745 Response regulators consisting of a CheY-li... 243 2e-64 mlr1334 [TK] COG0745 Response regulators consisting of a CheY-li... 227 2e-59 BMEII0791 [TK] COG0745 Response regulators consisting of a CheY-... 223 4e-58 >PA4101 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 246 Score = 293 bits (749), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 148/244 (60%), Positives = 182/244 (74%), Gaps = 3/244 (1%) Query: 4 MDTNSHILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLTLPG 63 M+ HIL+VDDDREIR L+ YL NG RT +G MR L+ + VDLIVLD+ +PG Sbjct: 1 MEHVDHILIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLEANTVDLIVLDIMMPG 60 Query: 64 EDGLTLCRNLRAQSN--VPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSV 121 +DGL LCR LR + PV+MLTAR + DRI+GLEMGADDYL KPF REL ARI +V Sbjct: 61 DDGLLLCRELRVGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAV 120 Query: 122 LRRTQALPPSMMRPEA-KTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPN 180 LRRT+ LPP++ E+ + + F W LD +ARHLL+ G VVALSGAE+R+L+VFLDHP Sbjct: 121 LRRTRMLPPNLTVSESSRLIGFGQWQLDTSARHLLDDAGTVVALSGAEYRLLRVFLDHPQ 180 Query: 181 RILNRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT 240 R+L+RDQLL LTQGREAD FDRS+D+ +SRLRQ+LGDDAR P IKTVR+EGYV + V Sbjct: 181 RVLSRDQLLNLTQGREADIFDRSIDLLVSRLRQRLGDDAREPEYIKTVRSEGYVFSLPVR 240 Query: 241 LEDA 244 L +A Sbjct: 241 LVEA 244 >SMb20219 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 245 Score = 287 bits (734), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 138/241 (57%), Positives = 180/241 (74%), Gaps = 3/241 (1%) Query: 4 MDTNSHILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLTLPG 63 M+ HIL+VDDDREIR L++ YL NG R +G MR L+ + VDLI+LDL +PG Sbjct: 1 MEHIDHILIVDDDREIRELVSAYLKKNGLRVTAVADGRQMRTFLEANTVDLIILDLMMPG 60 Query: 64 EDGLTLCRNLRA--QSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSV 121 +DGL L R LR P++MLTAR + +DRI+GLEMGADDY+AKPF REL ARI++V Sbjct: 61 DDGLVLSRELRVGRHKATPIVMLTARSDEMDRIIGLEMGADDYIAKPFSARELLARIKAV 120 Query: 122 LRRTQALPPSMMRPEA-KTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPN 180 LRR + LP ++ EA + + F W LD TARHL++ +G +ALSGAE+R+L+VF+DHP Sbjct: 121 LRRARMLPANLQVSEAGQLLRFGQWKLDTTARHLIDADGTAIALSGAEYRLLRVFVDHPQ 180 Query: 181 RILNRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT 240 R+LNRDQLL LTQGREA+ FDRS+D+ +SR+RQ+LGDDAR PT I+TVR+EGYV + V Sbjct: 181 RVLNRDQLLNLTQGREAELFDRSIDLLVSRVRQRLGDDAREPTYIRTVRSEGYVFSVPVE 240 Query: 241 L 241 + Sbjct: 241 I 241 >mlr2740 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 238 Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 3/240 (1%) Query: 4 MDTNSHILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLTLPG 63 M +++HIL+VDDD+ IR LL E+ G T A +G +M VL ++VDLIVLD+ LPG Sbjct: 1 MKSDAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGTEMEAVLRRAQVDLIVLDVMLPG 60 Query: 64 EDGLTLCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 123 + GL LCR+LRAQ + P+IMLTA E DR++GLEMGADDY+ KPF+PREL ARIR+VLR Sbjct: 61 KSGLELCRDLRAQYSTPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLR 120 Query: 124 RTQALPPSMMRPEAKTMH-FSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPNRI 182 R A P R AK ++ F+GWT+D + R L P+ V V L+ AEF +L+ F+ R+ Sbjct: 121 RNGAAEPK--RATAKQIYRFAGWTMDCSRRRLTAPDDVRVELTMAEFNLLQTFVKSAQRV 178 Query: 183 LNRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTLE 242 L RDQL+EL+ G FDRS+DI +SRLR+K+ DD +TP +I TVR+ GY T E Sbjct: 179 LTRDQLIELSGGDSDYSFDRSIDILVSRLRRKMEDDPKTPKLILTVRSGGYQFLPETTSE 238 >mlr1334 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 255 Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 116/231 (50%), Positives = 151/231 (65%), Gaps = 2/231 (0%) Query: 9 HILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLTLPGEDGLT 68 HIL+V+DD EI +L E L NG A NGA M L + DLIVLD+ LPGE+GL+ Sbjct: 24 HILIVEDDIEIARMLGETLTENGMIVEIAGNGARMNAALRNQKFDLIVLDIMLPGENGLS 83 Query: 69 LCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQAL 128 +CR LRA +NVP++MLTA GE +DRI GLE+GADDY+ KPF REL ARIR++LRRT Sbjct: 84 ICRRLRAHTNVPILMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRTAYA 143 Query: 129 PPSMMRPEAKTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPNRILNRDQL 188 P R K + F+GW LD R L +P VA + EF +L F + R+L+R++L Sbjct: 144 PDE--RDRTKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNAGRVLSREEL 201 Query: 189 LELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTV 239 L +T A P +RSVD+ +SR+RQK+ DAR P ++KTVR GY+ TV Sbjct: 202 LSVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLKTVRLGGYIFTATV 252 >BMEII0791 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Bme Brucella melitensis Length = 238 Score = 223 bits (567), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 114/238 (47%), Positives = 156/238 (65%), Gaps = 1/238 (0%) Query: 4 MDTNSHILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLTLPG 63 M ++HIL+VDDD++IR LL E+L G A NG +M VL + +DL++LD+ LPG Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPG 60 Query: 64 EDGLTLCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 123 + G+ +C+++R S VP+IMLTA + D+ILGLE+GADDY+AKPF+PREL ARIR+VLR Sbjct: 61 KSGIEICQDVRRTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLR 120 Query: 124 RTQALPPSMMRPEAKTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPNRIL 183 R + S R + F+GWTLD R L +P V V L+ AEF +L+ F+ IL Sbjct: 121 RFEG-NRSPQRALTQIYRFAGWTLDCARRRLTSPHDVRVELTTAEFNLLEAFVKSSQHIL 179 Query: 184 NRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTL 241 +RDQL+E+ + +DRSVDI ISRLR+KL DD P +I T+R GY V + Sbjct: 180 SRDQLMEMAGHQAVYGYDRSVDILISRLRKKLEDDPCAPKLILTIRGGGYQFGHEVEI 237