BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0142.p         (207 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1199 [V] COG0841 Cation/multidrug efflux pump Rso Ralstonia s...   235   5e-62
PA2526 [V] COG0841 Cation/multidrug efflux pump Pae Pseudomonas ...   198   6e-51
YPO2849 [V] COG0841 Cation/multidrug efflux pump Ype Yersinia pe...   197   2e-50
yegO [V] COG0841 Cation/multidrug efflux pump Eco Escherichia co...   179   4e-45
ECs2884 [V] COG0841 Cation/multidrug efflux pump Ecs Escherichia...   179   4e-45

>RSp1199 [V] COG0841 Cation/multidrug efflux pump Rso Ralstonia solanacearum
          Length = 1033

 Score =  235 bits (599), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 107/149 (71%), Positives = 132/149 (88%)

Query: 45  ARDVQAALNAARSLLPSGMPSSPSYRKVNPADAPIMILALTSDTMTQGQMYDAADSILAQ 104
           ARDVQAA+NA+RSLLPSG+PS+P+YRKVNPADAPIMIL LTSDT ++G++YDAA +ILAQ
Sbjct: 105 ARDVQAAINASRSLLPSGLPSNPTYRKVNPADAPIMILGLTSDTKSRGELYDAASTILAQ 164

Query: 105 KLSQVRGIGQVSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGIVEDGD 164
           KLSQ+ G+GQV++GG+S PAVR+ELNPTALNKYGI T  VRT + ATNAN+PKG++E G+
Sbjct: 165 KLSQITGVGQVNIGGASLPAVRVELNPTALNKYGISTETVRTVITATNANKPKGMLEAGN 224

Query: 165 RNWQIYANDQVKTAAEYAPLIVSYRNGAP 193
           R W +YANDQ + A EY PLI++YRNGAP
Sbjct: 225 RVWTLYANDQARHAEEYKPLIIAYRNGAP 253


>PA2526 [V] COG0841 Cation/multidrug efflux pump Pae Pseudomonas aeruginosa
          Length = 1036

 Score =  198 bits (504), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 122/150 (81%), Gaps = 2/150 (1%)

Query: 45  ARDVQAALNAARSLLPSGMPSSPSYRKVNPADAPIMILALTSDTMTQGQMYDAADSILAQ 104
           AR+VQAA+N A SLLPSGMP++PSYRK NP+D PIM+L LTS+T ++G+MYD A ++LA 
Sbjct: 105 AREVQAAINGAMSLLPSGMPNNPSYRKANPSDMPIMVLTLTSETQSRGEMYDLASTVLAP 164

Query: 105 KLSQVRGIGQVSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGIVEDGD 164
           KLSQV+G+GQVS+GGSS PAVR++LNP A+++YG+    VRTA+AA N+N PKG VE  D
Sbjct: 165 KLSQVQGVGQVSIGGSSLPAVRVDLNPDAMSQYGLSLDSVRTAIAAANSNGPKGAVEKDD 224

Query: 165 RNWQIYANDQVKTAAEYAPLIVSYR--NGA 192
           ++WQ+ ANDQ++ A EY PL++ Y   NGA
Sbjct: 225 KHWQVDANDQLRKAREYEPLVIHYNADNGA 254


>YPO2849 [V] COG0841 Cation/multidrug efflux pump Ype Yersinia pestis
          Length = 1024

 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/149 (61%), Positives = 117/149 (78%)

Query: 45  ARDVQAALNAARSLLPSGMPSSPSYRKVNPADAPIMILALTSDTMTQGQMYDAADSILAQ 104
           ARDVQAALNAA+SLLPSGMPS P+YRK+NP+DAPIMI+ LTSDT +QGQ+YD A + LAQ
Sbjct: 105 ARDVQAALNAAQSLLPSGMPSRPTYRKMNPSDAPIMIMTLTSDTFSQGQLYDYASTKLAQ 164

Query: 105 KLSQVRGIGQVSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGIVEDGD 164
           K++Q  G+  V+VGGSS PAVR+ELNP+AL   G+    VR A++A N  RP+G V+  +
Sbjct: 165 KIAQTEGVSDVTVGGSSLPAVRVELNPSALFNQGVSLDAVRQAISAANVRRPQGSVDAAE 224

Query: 165 RNWQIYANDQVKTAAEYAPLIVSYRNGAP 193
            +WQ+ AND++KTA  Y PLIV Y NG+P
Sbjct: 225 THWQVQANDEIKTAEGYRPLIVHYNNGSP 253


>yegO [V] COG0841 Cation/multidrug efflux pump Eco Escherichia coli K12
          Length = 1025

 Score =  179 bits (454), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 113/147 (76%)

Query: 45  ARDVQAALNAARSLLPSGMPSSPSYRKVNPADAPIMILALTSDTMTQGQMYDAADSILAQ 104
           ARDVQAA+NAA+SLLPSGMPS P+YRK NP+DAPIMIL LTSDT +QG++YD A + LA 
Sbjct: 105 ARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGELYDFASTQLAP 164

Query: 105 KLSQVRGIGQVSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGIVEDGD 164
            +SQ+ G+G V VGGSS PAVR+ LNP AL   G+   DVRTAV+  N  +P+G +EDG 
Sbjct: 165 TISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGT 224

Query: 165 RNWQIYANDQVKTAAEYAPLIVSYRNG 191
             WQI  ND++KTAAEY PLI+ Y NG
Sbjct: 225 HRWQIQTNDELKTAAEYQPLIIHYNNG 251


>ECs2884 [V] COG0841 Cation/multidrug efflux pump Ecs Escherichia coli
           O157:H7
          Length = 1025

 Score =  179 bits (454), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/147 (62%), Positives = 113/147 (76%)

Query: 45  ARDVQAALNAARSLLPSGMPSSPSYRKVNPADAPIMILALTSDTMTQGQMYDAADSILAQ 104
           ARDVQAA+NAA+SLLPSGMPS P+YRK NP+DAPIMIL LTSDT +QG++YD A + LA 
Sbjct: 105 ARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGELYDFASTQLAP 164

Query: 105 KLSQVRGIGQVSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGIVEDGD 164
            +SQ+ G+G V VGGSS PAVR+ LNP AL   G+   DVRTA++  N  +P+G +EDG 
Sbjct: 165 TISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGT 224

Query: 165 RNWQIYANDQVKTAAEYAPLIVSYRNG 191
             WQI  ND++KTAAEY PLI+ Y NG
Sbjct: 225 HRWQIQTNDELKTAAEYQPLIIHYNNG 251