BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0129.p (222 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3714 [TK] COG2197 Response regulator containing a CheY-like re... 130 2e-30 RSc3388 [TK] COG2197 Response regulator containing a CheY-like r... 125 6e-29 RSc3078 [TK] COG2197 Response regulator containing a CheY-like r... 125 7e-29 PA4080 [TK] COG2197 Response regulator containing a CheY-like re... 117 1e-26 ZrcsB [TK] COG2197 Response regulator containing a CheY-like rec... 107 1e-23 >PA3714 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 213 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 122/213 (57%), Gaps = 5/213 (2%) Query: 10 QIAIADDHPVVLNALKHELGRLPEFRIVLMAHTGDELLESLQRTPCEVVITDFAMPTDRG 69 ++ + DDH + L +++ L + RIV A D LL L+ PC+++ITD MP + Sbjct: 4 RVILVDDHALTLIGMRYLLSAYDDLRIVAQAQDADGLLAQLEAHPCDLLITDLMMPGSQ- 62 Query: 70 DEADGFVLIKRIRAEFPSTKLIVYTAMSNSAVVKRLYRMGVFSVISKKEKADELVNACLA 129 +ADG L++++R +P +IV T + N A+V L ++G+ ++SK+ D+L A Sbjct: 63 -QADGLRLVQKVRRRYPDLPIIVVTMLGNPALVSSLLKLGIHGLVSKRGMLDDLPKAI-- 119 Query: 130 TQSTKQVYFPVSLRGELEMSWAQ-GDAFTQNKELTMSELEVMRLFVGGCSLGDICDRLSR 188 + ++ + S+ LE+ A+ G ++LT E+EV+RL+ G ++G+I RL R Sbjct: 120 RHAGRRPFISRSIAHLLEVGEAEHGKPLASLEQLTPREVEVLRLYGSGLAVGEIAIRLCR 179 Query: 189 TPSTVSTHKNNAMRKLGLSTDADLIKYAYATGM 221 + T+S K++AMRKLGL ++A L Y G+ Sbjct: 180 SKQTISAQKSSAMRKLGLDSNAGLFIYIRENGL 212 >RSc3388 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 215 Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 122/220 (55%), Gaps = 12/220 (5%) Query: 5 LNKVLQIAIADDHPVVLNALKHELGRLPEFRIVLMAHTGDELLESLQRTPCEVVITDFAM 64 ++ L I ADDHPV+L L + + P +I+ AH G LL L+ T C+VV+TD+ M Sbjct: 1 MSPFLSIVAADDHPVILMGLATAIQQFPRQKIIAQAHDGHALLALLESTDCDVVVTDYHM 60 Query: 65 PTDRGDEA-DGFVLIKRIRAEFPSTKLIVYTAMSNSAVVKRLYRMGVFSVISKKEKADEL 123 GD A DG L+ R+RA P ++V T + N A+++ + ++GV ++SK++ + Sbjct: 61 ---NGDAASDGMQLLTRLRARHPQRAVVVCTMVCNPALLRCMQQLGVRRIVSKRDDLAHV 117 Query: 124 VNACLATQSTKQVYFPVSLRGELEMSWAQG--DAFTQNKELTMSELEVMRLFVGGCSLGD 181 +A A+ Y P + LE + G +AF + L+ E EV+ L+V G ++ + Sbjct: 118 GHAVAASACGLPYYSPTIV---LEGGFGIGAREAF---QGLSAREREVVSLYVSGMAVSE 171 Query: 182 ICDRLSRTPSTVSTHKNNAMRKLGLSTDADLIKYAYATGM 221 I RL + TVST K A+RKLGL+ + DL +Y G+ Sbjct: 172 IASRLGSSIKTVSTQKTMALRKLGLARETDLFQYVRTAGL 211 >RSc3078 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 222 Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 119/217 (54%), Gaps = 7/217 (3%) Query: 9 LQIAIADDHPVVLNALKHELGRLPEFRIVLMAHTGDELLESLQRTPCEVVITDFAMPTDR 68 ++ AIADDHP V+ A++H + R+ F +V A + D LL L R C+VVITD+AMP R Sbjct: 5 VRFAIADDHPGVVAAVRHLVCRVEGFEVVGEATSADGLLALLGRVHCDVVITDYAMPASR 64 Query: 69 GDEADGFVLIKRIRAEFPSTKLIVYTAMSNSAVVKRLYRMGVFSVISKKEKADEL---VN 125 DG VL++ + P +++V T + AVV R+ R G+ + SK + + V+ Sbjct: 65 --HGDGIVLLEFLLRRHPGVRVVVLTMLETHAVVDRMLRAGIRVIASKADSPHHILEGVH 122 Query: 126 ACLATQSTKQVYFPVSLRGELEMSWAQGDAFTQNKELTMSELEVMRLFVGGCSLGDICDR 185 A LA ++ F L + D L ELEV+R++VGG ++ +I R Sbjct: 123 AALAGRAYLSPRFGPRL--DSAHPGHAPDDHGALDRLGKRELEVLRMYVGGETVSEIARR 180 Query: 186 LSRTPSTVSTHKNNAMRKLGLSTDADLIKYAYATGMI 222 L+R+ T+S K +MRKL L+T+A L +A G++ Sbjct: 181 LNRSVKTISAQKQKSMRKLRLATEAALFDFAAQHGLL 217 >PA4080 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 214 Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 115/214 (53%), Gaps = 19/214 (8%) Query: 9 LQIAIADDHPVVLNALKHELGRLPEFRIVLMAHTGDELLESLQRTPCEVVITDFAMPTDR 68 +++ +ADDHP + + +EL + ++ EL+ L C+VVI D+ MP Sbjct: 6 IRVMVADDHPAISLGISYELSQCGSLEMLGQVSNSTELIGRLNEGDCDVVIVDYTMPG-- 63 Query: 69 GDEADGFVLIKRIRAEFPSTKLIVYTAMSNSAVVKRLYRMGVFSVISKKEKADELVNACL 128 G DG L+ +R +P +L+V+T ++N +++ + + G+ ++SK + L+ A Sbjct: 64 GKYGDGLALLSLLRRRYPHLQLVVFTMLNNPGLIRAILKQGINCILSKSDSTSHLLAAVS 123 Query: 129 ATQSTKQVYFPVSLRGELEMSWAQGDAF------TQNKELTMSELEVMRLFVGGCSLGDI 182 A S Q YF S+R D F + N+ LT E E++RLF G ++ +I Sbjct: 124 AAYSRNQ-YFSPSIR----------DIFVNQVLSSHNERLTPREAEIVRLFGSGLTITEI 172 Query: 183 CDRLSRTPSTVSTHKNNAMRKLGLSTDADLIKYA 216 +R R+ T+ST K +AM+KLG+ DADLI+YA Sbjct: 173 AERSHRSVQTISTQKVSAMKKLGIKRDADLIRYA 206 >ZrcsB [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 216 Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 6/207 (2%) Query: 9 LQIAIADDHPVVLNALKHELGRLPEFRIVLMAHTGDELLESLQRTPCEVVITDFAMPTDR 68 + + IADDHP+VL ++ L ++ +V L+ +L + V+ITD +MP D+ Sbjct: 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDK 63 Query: 69 GDEADGFVLIKRIRAEFPSTKLIVYTAMSNSAVVKRLYRMGVFSVISKKEKADELVNACL 128 DG LIK I+ FPS +IV T +N A++ + + + ++ K+ +L A Sbjct: 64 --YGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALA 121 Query: 129 ATQSTKQVYFPVSLRGELEMSWAQGDAFTQNKELTMSELEVMRLFVGGCSLGDICDRLSR 188 A Q K+ + P S+ LE A G +K L+ E EV+RLF G + +I +L+R Sbjct: 122 ALQKGKK-FTPESVSRLLEKISAGG---YGDKRLSPKESEVLRLFAEGFLVTEIAKKLNR 177 Query: 189 TPSTVSTHKNNAMRKLGLSTDADLIKY 215 + T+S+ K +AM KLG+ D L+ Y Sbjct: 178 SIKTISSQKKSAMMKLGVENDXALLNY 204