BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0126.p (252 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO2944 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 193 4e-49 ZecpD [NU] COG3121 P pilus assembly protein, chaperone PapD EcZ ... 186 6e-47 ECs0144 [NU] COG3121 P pilus assembly protein, chaperone PapD Ec... 185 7e-47 XF0082 [NU] COG3121 P pilus assembly protein, chaperone PapD Xfa... 185 9e-47 PA4085 [NU] COG3121 P pilus assembly protein, chaperone PapD Pae... 171 1e-42 >YPO2944 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 259 Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 109/249 (43%), Positives = 159/249 (63%), Gaps = 19/249 (7%) Query: 10 VALLLAASTASSWASVIIHGTRVIFPSSEKEVSVRLSNEGVSPGLVQMWMDAGDISAKPD 69 + L L S+ ++A++ I GTRVIFP++EKEVS+R +N+GV P LVQ+W+D G +A + Sbjct: 14 LVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANIN 73 Query: 70 ETKVPFILTPPLFRIEPGKGQTLRMIHTREPLPQDKETIFYLNLLEVPPRPVELEEENAN 129 K+PF++TPP+FR+EPGKGQT+RMI+ LPQ+KE++F+ N+LE+P V+ E N Sbjct: 74 SMKLPFMVTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIP--AVKKEGNTQN 131 Query: 130 FMQMAFRTRIKVFYRPKALDNQDAYYKGPAQFAWTVVREGS-GYALELRNPTPYYFSLIN 188 +++AFRTRIKVFYRP +L++ A AQ WT+V + G +++ NPTPYY S + Sbjct: 132 KLELAFRTRIKVFYRPTSLESNSA--AQSAQLKWTLVDDNQKGRGVKVVNPTPYYISFDS 189 Query: 189 AGL---ASNVEGGPDIMNSEGGMVAPGGTQKF--PLKDLKSTPAGGQKVKFEFLNDYGGA 243 + A +VE D MV P + F LK L ST K+ ++ LNDYG A Sbjct: 190 GSITVGAKSVEIITD-------MVPPFSEKMFFPKLKLLGSTSIS--KMNYKILNDYGAA 240 Query: 244 VVGEGTVSK 252 + E + S+ Sbjct: 241 IDEELSFSQ 249 >ZecpD [NU] COG3121 P pilus assembly protein, chaperone PapD EcZ Escherichia coli O157:H7 EDL933 Length = 243 Score = 186 bits (471), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 154/250 (61%), Gaps = 15/250 (6%) Query: 1 MKRNITRTAVALLLAASTASSWASVIIHGTRVIFPSSEKEVSVRLSNEGVSPGLVQMWMD 60 +K+ ++ V+ LLA +A ++A +II GTR+I+ + +K+V+VRL N+G P L+Q W+D Sbjct: 7 VKKTVSALFVSTLLA--SAPAFADIIISGTRIIYNADKKDVNVRLENKGNRPLLIQNWLD 64 Query: 61 AGDISAKPDETKVPFILTPPLFRIEPGKGQTLRMIHT-REPLPQDKETIFYLNLLEVPPR 119 GD +A P + KVPF TPP+ R+EP +GQT+++++T LP+D+E++++ N+LEVPP+ Sbjct: 65 TGDDNADPSQIKVPFTATPPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVPPK 124 Query: 120 PVELEEENANFMQMAFRTRIKVFYRPKALDNQDAYYKGPAQFAWTVVREGSGYALELRNP 179 P + E + N +Q+AFRTRIK+FYRP L + A + PA+ W + + L+ NP Sbjct: 125 PKDAEADK-NLLQLAFRTRIKLFYRPSGLQGEPA--EAPAKITWKL----NNAQLQANNP 177 Query: 180 TPYYFSLINAGLASNVEGGPDIMNSEGGMVAPGGTQKFPLKDLKSTPAGGQKVKFEFLND 239 TPYY S L E G N MV P F + L + + G KV F+ +ND Sbjct: 178 TPYYVSFNEVKL----ESGGKTYNVNSSMVTPFSQASFGVTSLPGSVSSG-KVVFKAIND 232 Query: 240 YGGAVVGEGT 249 +GG + G T Sbjct: 233 FGGNIDGSAT 242 >ECs0144 [NU] COG3121 P pilus assembly protein, chaperone PapD Ecs Escherichia coli O157:H7 Length = 241 Score = 185 bits (470), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 154/250 (61%), Gaps = 15/250 (6%) Query: 1 MKRNITRTAVALLLAASTASSWASVIIHGTRVIFPSSEKEVSVRLSNEGVSPGLVQMWMD 60 +K+ ++ V+ LLA +A ++A +II GTR+I+ + +K+V+VRL N+G P L+Q W+D Sbjct: 5 VKKTVSALFVSTLLA--SAPAFADIIISGTRIIYNADKKDVNVRLENKGNRPLLIQNWLD 62 Query: 61 AGDISAKPDETKVPFILTPPLFRIEPGKGQTLRMIHT-REPLPQDKETIFYLNLLEVPPR 119 GD +A P + KVPF TPP+ R+EP +GQT+++++T LP+D+E++++ N+LEVPP+ Sbjct: 63 TGDDNADPSQIKVPFTATPPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVPPK 122 Query: 120 PVELEEENANFMQMAFRTRIKVFYRPKALDNQDAYYKGPAQFAWTVVREGSGYALELRNP 179 P + E + N +Q+AFRTRIK+FYRP L + A + PA+ W + + L+ NP Sbjct: 123 PKDAEADK-NLLQLAFRTRIKLFYRPSGLQGEPA--EAPAKITWKL----NNAQLQANNP 175 Query: 180 TPYYFSLINAGLASNVEGGPDIMNSEGGMVAPGGTQKFPLKDLKSTPAGGQKVKFEFLND 239 TPYY S L E G N MV P F + L + + G KV F+ +ND Sbjct: 176 TPYYVSFNEVKL----ESGGKTYNVNSSMVTPFSQASFGVTSLPGSVSSG-KVVFKAIND 230 Query: 240 YGGAVVGEGT 249 +GG + G T Sbjct: 231 FGGNIDGSAT 240 >XF0082 [NU] COG3121 P pilus assembly protein, chaperone PapD Xfa Xylella fastidiosa 9a5c Length = 266 Score = 185 bits (469), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 97/245 (39%), Positives = 149/245 (60%), Gaps = 21/245 (8%) Query: 13 LLAASTA----SSWASVIIHGTRVIFPSSEKEVSVRLSNEGVSPGLVQMWMDAGDISAKP 68 +LA ST S++A +II GTRV++P+ ++V+V+++N G +P L+Q WMD GD P Sbjct: 16 VLALSTCLWAQSAFAGIIIAGTRVVYPAQSRDVTVQVTNTGENPALLQTWMDDGDSKQTP 75 Query: 69 DETKVPFILTPPLFRIEPGKGQTLRMIHT-REPLPQDKETIFYLNLLEVPPRPVELEEEN 127 DE+K PF++TPP+ R+EPG GQ LR+ T LP+D+E++F+LN+LE+PP P+E ++N Sbjct: 76 DESKAPFLVTPPISRVEPGSGQALRLFFTGTTTLPEDRESLFWLNVLEIPPTPLEHSDKN 135 Query: 128 A----------NFMQMAFRTRIKVFYRPKALDNQDAYYKGPAQFAWTVVREGSGYALELR 177 A N++Q+AFR+RIKVFYRP L + + PA +W V G L + Sbjct: 136 AQTSADKSDSQNYLQLAFRSRIKVFYRPAKL--KGTANESPASLSWKVNSNGQ---LLVS 190 Query: 178 NPTPYYFSLINAGLASNVEGGPDIMNSEGGMVAPGGTQKFPLKDLKSTPAGGQKVKFEFL 237 NPTPY+ +L A + +G + ++ G ++ PG F + + V F ++ Sbjct: 191 NPTPYHVTLTRTE-ALDDKGRKETIDKIGVLLTPGQEYTFKANKSDGLSSRWKSVSFTYI 249 Query: 238 NDYGG 242 NDYGG Sbjct: 250 NDYGG 254 >PA4085 [NU] COG3121 P pilus assembly protein, chaperone PapD Pae Pseudomonas aeruginosa Length = 248 Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/243 (39%), Positives = 144/243 (59%), Gaps = 21/243 (8%) Query: 5 ITRTAVALLLAASTASSWASVIIHGTRVIFPSSEKEVSVRLSNEGVSPGLVQMWMDAGDI 64 + +AVA+ L TA A +I GTRV+FP+SE+EV++R+SN +P L Q W+D G Sbjct: 12 VAASAVAIALCVGTAH--AGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQ 69 Query: 65 SAKPDETKVPFILTPPLFRIEPGKGQTLRMIHTREPLPQDKETIFYLNLLEVPPRPVELE 124 P+E +VPF +TP + R+EP G LR+ + + PLP D+E++F+LN+LEVPPR + Sbjct: 70 DVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPR----D 125 Query: 125 EENANFMQMAFRTRIKVFYRPKALDNQDAYYKGPAQFAWTVVREGSG---YALELRNPTP 181 E+ N +Q +FR+R K+F+RP L + D+ + W + G +++ NPTP Sbjct: 126 EDENNALQFSFRSRFKLFFRPSQLKSVDS---AAGKLQWKFLESGGAGKKTVVQVNNPTP 182 Query: 182 YYFSLINAGLASNVEGGPDIMNSEGGMVAPGGTQKFPLKDLKSTPAG--GQKVKFEFLND 239 YY S + L V+G +M+ GMVAP T++F D + P V++E +ND Sbjct: 183 YYVSFASVELI--VDG--RVMSVGKGMVAPFSTKEF---DWQGNPKNMEAASVRYEVIND 235 Query: 240 YGG 242 YGG Sbjct: 236 YGG 238