BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0119.p         (122 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ydbU [I] COG1250 3-hydroxyacyl-CoA dehydrogenase Eco Escherichia...    96   3e-20
PA1628 [I] COG1250 3-hydroxyacyl-CoA dehydrogenase Pae Pseudomon...    85   4e-17
BH3800 [I] COG1250 3-hydroxyacyl-CoA dehydrogenase Bha Bacillus ...    78   6e-15
RSc2013 [I] COG1250 3-hydroxyacyl-CoA dehydrogenase Rso Ralstoni...    77   9e-15
PA3590 [I] COG1250 3-hydroxyacyl-CoA dehydrogenase Pae Pseudomon...    75   4e-14

>ydbU [I] COG1250 3-hydroxyacyl-CoA dehydrogenase Eco Escherichia coli
           K12
          Length = 475

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 63/105 (60%)

Query: 9   DAAYFSIVALLQAAGFAVSRLDDVPGMAVMRTVAMLANEAADTVNQGVCSAADADMAMQK 68
           D+A    +  LQ  G  V ++ D PGM + RTVAM+ NEA D + +GV S  D D AM+ 
Sbjct: 362 DSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEALDALQKGVASEQDIDTAMRL 421

Query: 69  GVNYPRGPLAWADAIGLDTVAEVLSHLAAAYGEDRYRVSPLIMRK 113
           GVNYP GPLAW   +G   +  +L +L   YGE+RYR   L+ ++
Sbjct: 422 GVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQR 466


>PA1628 [I] COG1250 3-hydroxyacyl-CoA dehydrogenase Pae Pseudomonas
           aeruginosa
          Length = 509

 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 4/105 (3%)

Query: 9   DAAYFSIVALLQAAGFAVSRLDDVPGMAVMRTVAMLANEAADTVNQGVCSAADADMAMQK 68
           DAA+    ALL   G  V+ L D PG  V R +AM+ N A D   QG+ S  D D A+  
Sbjct: 393 DAAH----ALLAGDGVGVTVLRDSPGFVVQRVLAMIVNLACDIAQQGIASVEDIDQAVHL 448

Query: 69  GVNYPRGPLAWADAIGLDTVAEVLSHLAAAYGEDRYRVSPLIMRK 113
           G+ YP GPL W D +G   +  +L  L A  G+ RYR SP + R+
Sbjct: 449 GLGYPHGPLEWGDRLGPRRLLSILQRLQALTGDPRYRPSPWLRRR 493


>BH3800 [I] COG1250 3-hydroxyacyl-CoA dehydrogenase Bha Bacillus halodurans
          Length = 284

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 1   VTRADQCSDAAYFSIVALLQAAGFAVSRLDDVPGMAVMRTVAMLANEAADTVNQGVCSAA 60
           + R    +D  Y ++ AL +        ++D PG    R +  + NEA  TV +GV +  
Sbjct: 153 IIRGLATADDVYETVEALTKKLNKTPVEVNDFPGFVSNRVLMPMINEAIYTVYEGVATPE 212

Query: 61  DADMAMQKGVNYPRGPLAWADAIGLDTVAEVLSHLAAAYGEDRYRVSPLIMRKTASKG 118
             D  M+ G+N+P GPL  AD IGLDT   ++  L   +G+D+YR  PL +RK    G
Sbjct: 213 AVDEVMKLGMNHPMGPLTLADFIGLDTCLYIMETLHEGFGDDKYRPCPL-LRKYVKAG 269


>RSc2013 [I] COG1250 3-hydroxyacyl-CoA dehydrogenase Rso Ralstonia
           solanacearum
          Length = 502

 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 54/96 (56%)

Query: 18  LLQAAGFAVSRLDDVPGMAVMRTVAMLANEAADTVNQGVCSAADADMAMQKGVNYPRGPL 77
           L  A G  V+ + D  G    R VA + N A D   Q + + AD D+A+  G+ YP+GPL
Sbjct: 395 LFAADGVPVTVIRDSGGFVAQRIVACIVNIACDIAQQRIATPADIDLAVTLGLGYPQGPL 454

Query: 78  AWADAIGLDTVAEVLSHLAAAYGEDRYRVSPLIMRK 113
           A  D +G   V EVL +L   YG+ RYR SP ++R+
Sbjct: 455 ALGDTLGAGAVLEVLQNLTTLYGDPRYRPSPWLLRR 490


>PA3590 [I] COG1250 3-hydroxyacyl-CoA dehydrogenase Pae Pseudomonas
           aeruginosa
          Length = 510

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 50/91 (54%)

Query: 23  GFAVSRLDDVPGMAVMRTVAMLANEAADTVNQGVCSAADADMAMQKGVNYPRGPLAWADA 82
           G  V+ + D  G  V RT+A + N A D   QG+ S    D+A++ G+ YP GPL W D 
Sbjct: 404 GVGVTLIRDSAGFIVQRTLASIVNLACDIAQQGIASVEHIDLAVRLGLGYPLGPLEWGDR 463

Query: 83  IGLDTVAEVLSHLAAAYGEDRYRVSPLIMRK 113
           +G   V  +L  L A  G+ RYR SP + R+
Sbjct: 464 LGAGRVLRILERLHALSGDPRYRPSPWLRRR 494