BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0107.p         (130 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3329 [E] COG0683 ABC-type branched-chain amino acid transport...   184   3e-47
DRA0263 [E] COG0683 ABC-type branched-chain amino acid transport...   157   5e-39
RSc2428 [E] COG0683 ABC-type branched-chain amino acid transport...   153   1e-37
AGc2609 [E] COG0683 ABC-type branched-chain amino acid transport...    94   1e-19

>RSc3329 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Rso Ralstonia solanacearum
          Length = 382

 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 103/114 (90%)

Query: 3   VGVTLSTTGPAASLGIPEKNTIALLPTTIAGQKVNYIVLDDASDTTQAVKNTRRFISENN 62
           VGVT+S TGP ASLGIPEKNT++LLP  IAG+K+ YIVLDDASDTT AVKNTR+ I+E+ 
Sbjct: 27  VGVTVSATGPGASLGIPEKNTVSLLPKEIAGKKIEYIVLDDASDTTTAVKNTRKLITEDK 86

Query: 63  VDLIIGSTVSPNSLSMIEVVAEAQTPMISLAASARIVEPMDAKKKWVFKTPQND 116
           VDL+IGST++P SL+M++V AE++TPMISLAASARIVEPMDAK+ WVFKTPQND
Sbjct: 87  VDLVIGSTITPTSLAMVDVAAESETPMISLAASARIVEPMDAKRVWVFKTPQND 140


>DRA0263 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Dra Deinococcus radiodurans
          Length = 424

 Score =  157 bits (398), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 95/114 (83%)

Query: 1   MHVGVTLSTTGPAASLGIPEKNTIALLPTTIAGQKVNYIVLDDASDTTQAVKNTRRFISE 60
           + VGV +S+TG AASLGIPE+NT+ALLP TI G+KV+YI+LDDASDTT AV   R+ + E
Sbjct: 66  IKVGVIVSSTGSAASLGIPERNTVALLPKTIGGEKVSYIILDDASDTTAAVTAARKLVQE 125

Query: 61  NNVDLIIGSTVSPNSLSMIEVVAEAQTPMISLAASARIVEPMDAKKKWVFKTPQ 114
           N VDLI+G+T +P SL++I+V AE++TPMISLAAS  I++P+D K+ WVFKTPQ
Sbjct: 126 NKVDLILGTTTTPASLALIDVAAESKTPMISLAASEAIIKPVDGKRNWVFKTPQ 179


>RSc2428 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Rso Ralstonia solanacearum
          Length = 389

 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 68/116 (58%), Positives = 90/116 (77%)

Query: 1   MHVGVTLSTTGPAASLGIPEKNTIALLPTTIAGQKVNYIVLDDASDTTQAVKNTRRFISE 60
           + +GV LSTTGPAA++GIP +NT+ + PTT+ GQ+   IVLDDASD  QAV+N RR I+E
Sbjct: 28  LRIGVVLSTTGPAAAIGIPTRNTVQMWPTTLGGQRAQVIVLDDASDPAQAVRNVRRLIAE 87

Query: 61  NNVDLIIGSTVSPNSLSMIEVVAEAQTPMISLAASARIVEPMDAKKKWVFKTPQND 116
           ++VD I+G T++P +L+ ++ V E QTPMI+LAASA IVEP D K+ W FK PQND
Sbjct: 88  DHVDAIVGPTIAPTALASLDAVTEGQTPMIALAASASIVEPQDTKRHWAFKMPQND 143


>AGc2609 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 387

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 5/112 (4%)

Query: 3   VGVTLSTTGPAASLGIPEKNTIALLPTTIAGQKVNYIVLDDASDTTQAVKNTRRFISENN 62
           +GVT+ TTGP A+LGIP K +I   P  I G+K+  I+LDDA D + A  N RRF S++ 
Sbjct: 33  IGVTIPTTGPGAALGIPLKQSIEFWPADIDGEKLKVILLDDAGDPSVATTNARRFASDDK 92

Query: 63  VDLIIGSTVSPNSLSMIEVVAEAQTPMISLAASARIVEPMDAKKKWVFKTPQ 114
           VD+I+GS ++P ++++  V  E + P  +L+       P  A KKW F  PQ
Sbjct: 93  VDVIVGSALTPAAIAVAGVANETEVPHFALSPI-----PPTATKKWNFVMPQ 139