BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0106.p         (202 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DRA0263 [E] COG0683 ABC-type branched-chain amino acid transport...   285   7e-77
RSc3329 [E] COG0683 ABC-type branched-chain amino acid transport...   269   3e-72
RSc2428 [E] COG0683 ABC-type branched-chain amino acid transport...   228   5e-60
AGc2609 [E] COG0683 ABC-type branched-chain amino acid transport...   192   4e-49

>DRA0263 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Dra Deinococcus radiodurans
          Length = 424

 Score =  285 bits (728), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 133/198 (67%), Positives = 160/198 (80%)

Query: 2   KKVEVVANERFARNDTSATAQALKLMSAKPDAILIAGSGTPAVVPQRALAERGYKGLIYQ 61
           K +++VA ER+ARNDTS T QALK+ +A+PDA+LI  +G PAV+PQ+AL ERGYKG IYQ
Sbjct: 224 KGLKIVATERYARNDTSVTGQALKIFAARPDAVLIGAAGVPAVLPQKALNERGYKGKIYQ 283

Query: 62  THGVANSDFLRVGGKLLDNTLLPAGPVLVAAQLPADNPIRKVALGYTAKYEAIHGKDSVS 121
           THGVAN+DFLRVGGK ++   LPAGPVLVA QLPA NP R+V L Y   YE  +GKDSVS
Sbjct: 284 THGVANADFLRVGGKDVEGAFLPAGPVLVADQLPATNPTRRVGLNYMKLYEDKYGKDSVS 343

Query: 122 LFGGYAWDAGLLLQAAAPEALKKGKPGTPEFRAALRDALEASKNVNGVHGVYNMSATDHL 181
            FG +AWDAGL+LQ A P ALKKGKPGTP+FRAALRDA+E S+NV G HG++N+S TDHL
Sbjct: 344 TFGAHAWDAGLILQKAIPVALKKGKPGTPQFRAALRDAIEGSRNVIGAHGIFNLSKTDHL 403

Query: 182 GLDQRASVMVKIVNGAWK 199
           GLD R+ VMV++  G WK
Sbjct: 404 GLDARSRVMVQVQGGTWK 421


>RSc3329 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Rso Ralstonia solanacearum
          Length = 382

 Score =  269 bits (687), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 153/201 (76%), Gaps = 1/201 (0%)

Query: 1   LKKVEVVANERFARNDTSATAQALKLMSAKPDAILIAGSGTPAVVPQRALAERGYKGLIY 60
           L+K+++VANERFAR DTS T Q LK+M+AKPDA+LIAGSGTPA +PQRAL ERGYKG +Y
Sbjct: 182 LRKLQLVANERFARTDTSVTGQVLKIMAAKPDAVLIAGSGTPAALPQRALKERGYKGKLY 241

Query: 61  QTHGVANSDFLRVGGKLLDNTLLPAGPVLVAAQLPADNPIRKVALGYTAKYEAIHGKDSV 120
           QTHGVAN+DFLRV  K  + T LPAGP+LVA QLP  NP++K AL Y   YE   G   V
Sbjct: 242 QTHGVANADFLRVCAKDCEGTFLPAGPILVAEQLPDSNPVKKPALAYKVAYEKAFG-GQV 300

Query: 121 SLFGGYAWDAGLLLQAAAPEALKKGKPGTPEFRAALRDALEASKNVNGVHGVYNMSATDH 180
           S FGG+ WDAGLLL  A P ALKKG+PGT  FR  LRDALE + N+   HGV NM+A DH
Sbjct: 301 STFGGHMWDAGLLLANAMPAALKKGQPGTLAFRKGLRDALETTTNLAISHGVMNMNAKDH 360

Query: 181 LGLDQRASVMVKIVNGAWKYQ 201
           LGLDQR+ VMV+I +G WK Q
Sbjct: 361 LGLDQRSRVMVEIQDGKWKLQ 381


>RSc2428 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Rso Ralstonia solanacearum
          Length = 389

 Score =  228 bits (582), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 111/201 (55%), Positives = 150/201 (74%), Gaps = 1/201 (0%)

Query: 1   LKKVEVVANERFARNDTSATAQALKLMSAKPDAILIAGSGTPAVVPQRALAERGYKGLIY 60
           ++ ++VV +ERFAR D S T Q LKLM+A+PDAILIAG+GTPA +PQR L ERGYKG +Y
Sbjct: 185 VRGLQVVGSERFARTDASVTGQILKLMAARPDAILIAGAGTPAALPQRTLVERGYKGRLY 244

Query: 61  QTHGVANSDFLRVGGKLLDNTLLPAGPVLVAAQLPADNPIRKVALGYTAKYEAIHGKDSV 120
           QTHG+A+++FL+VGGK ++ TL P GPV+VA +LPA +P+R+VA+ +  +YEA +G ++V
Sbjct: 245 QTHGIASTEFLKVGGKDVEGTLFPTGPVVVARELPASHPVRQVAVAFVERYEARYGPNTV 304

Query: 121 SLFGGYAWDAGLLLQAAAPEALK-KGKPGTPEFRAALRDALEASKNVNGVHGVYNMSATD 179
           + F G AW A  LL  AA  ALK + +PGTP FRAALRDALE +  +   +GV N++A D
Sbjct: 305 TQFAGDAWGAWQLLDNAAERALKTRAQPGTPAFRAALRDALETTHGLTVPNGVLNLNARD 364

Query: 180 HLGLDQRASVMVKIVNGAWKY 200
           H G DQR+ VM  I +G + Y
Sbjct: 365 HQGFDQRSRVMGIIRDGRFAY 385


>AGc2609 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 387

 Score =  192 bits (488), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 126/199 (63%)

Query: 4   VEVVANERFARNDTSATAQALKLMSAKPDAILIAGSGTPAVVPQRALAERGYKGLIYQTH 63
           +E+VA ER+AR DTS + Q LK ++A+PDAI I  SGT A +PQ  + ERG+KG +Y   
Sbjct: 186 LELVAEERYARADTSVSGQVLKSLAARPDAIFIGASGTGAALPQIGVRERGFKGKVYVVS 245

Query: 64  GVANSDFLRVGGKLLDNTLLPAGPVLVAAQLPADNPIRKVALGYTAKYEAIHGKDSVSLF 123
           G    DFLR+ GK +DNT+  +GPV+VA   P   P ++  L Y   +E   G ++ + F
Sbjct: 246 GAVTFDFLRIAGKAVDNTVFASGPVMVAEDQPDSAPTKQEGLAYLKAFEGKFGPNTRTQF 305

Query: 124 GGYAWDAGLLLQAAAPEALKKGKPGTPEFRAALRDALEASKNVNGVHGVYNMSATDHLGL 183
           G + WD  ++L+ A P ALKK KPGT EFRAALRDA+E S   N  HGVY  +A +H GL
Sbjct: 306 GSHVWDVMVILKKAVPVALKKAKPGTAEFRAALRDAIETSGPYNATHGVYEFTADNHYGL 365

Query: 184 DQRASVMVKIVNGAWKYQP 202
           DQR  V++   +G +   P
Sbjct: 366 DQRGVVLLTAADGKFVLLP 384