BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0103.p (604 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0706_2 [E] COG0411 ABC-type branched-chain amino acid transpo... 392 e-108 RSp0706_1 [E] COG4177 ABC-type branched-chain amino acid transpo... 363 e-100 AGc2606_2 [E] COG0411 ABC-type branched-chain amino acid transpo... 312 2e-84 DRA0261_2 [E] COG0411 ABC-type branched-chain amino acid transpo... 299 1e-80 AGc2606_1 [E] COG4177 ABC-type branched-chain amino acid transpo... 295 3e-79 >RSp0706_2 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 257 Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust. Identities = 198/257 (77%), Positives = 226/257 (87%) Query: 348 AGDVILDVKAARKQFGGLVAVNDVSFSVKAGEVVGLIGPNGAGKSTTFNLVTGVLPITSG 407 AG+++LDV+A RK+FGGLVAVNDVSF V+AGE++GLIGPNGAGKSTTFNLVTGVLP+T G Sbjct: 1 AGELVLDVRAVRKEFGGLVAVNDVSFQVRAGEIIGLIGPNGAGKSTTFNLVTGVLPVTRG 60 Query: 408 EVNYRGRSIAGLSSRQIASRGIARTFQHVRLVPGMSVLENAAMGAYLRGDRAAQGGALAS 467 EV YRG I+G SR+I RGI RTFQHV+L+PGM+VLEN A+GA+LRGD AAQGG LAS Sbjct: 61 EVLYRGERISGKPSREIVRRGIGRTFQHVQLLPGMTVLENVALGAHLRGDFAAQGGVLAS 120 Query: 468 VLRLNRKEEDKILLEAKRQLERVGLGDMLYRPAGSLALGQQRILEIARALCCDPALLLLD 527 V R+NR EE K+L EA+ QLERVGL D +Y+ AGSLALGQQRILEIARALCCDPALLLLD Sbjct: 121 VARMNRHEEQKLLFEARCQLERVGLADCMYQEAGSLALGQQRILEIARALCCDPALLLLD 180 Query: 528 EPAAGLRYKEKEALSELLRKLRAEGMAVLLVEHDMDFVMQLTDHIVVMEFGTKIAEGTPA 587 EPAAGLRYKEK+AL+ LL +LRAEGM+VLLVEHDMDFVM LTD +VVMEFGT+IAEG P Sbjct: 181 EPAAGLRYKEKQALAALLARLRAEGMSVLLVEHDMDFVMNLTDRLVVMEFGTRIAEGVPQ 240 Query: 588 QIQVHPAVLEAYLGGVE 604 +Q PAVLEAYLGGVE Sbjct: 241 DVQRDPAVLEAYLGGVE 257 >RSp0706_1 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 351 Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust. Identities = 216/337 (64%), Positives = 272/337 (80%), Gaps = 5/337 (1%) Query: 10 KNKLVLSAIAPVIVLLVVLALPFLSVPPFWITLLSYVGLYSIVALGLVMLTGVAGLTSFG 69 +N+L+ +A + LL P L P FWITLL+Y+GLYS+VALGLV+LTGV GLTSFG Sbjct: 19 RNRLLTAAFVIGLALL-----PVLPTPEFWITLLNYIGLYSLVALGLVLLTGVGGLTSFG 73 Query: 70 QAAFVGIGAYTTAYVTTQFGLSPWIGLLAGVLITGVSALLIGAVTMRISGHFLPLSTIAW 129 QAAFVG+GAY+TAY++TQ+GLSPWIGLLAG+ IT SA +IG +TMR+SGH+LPL+TIAW Sbjct: 74 QAAFVGLGAYSTAYLSTQYGLSPWIGLLAGLAITVASAYVIGLITMRMSGHYLPLATIAW 133 Query: 130 GLSLYFLFGNLESLGKYDGIGGIPSISLFNFEFSSGKSMYVLIWVVVILALVSVKNFLNS 189 GLSL+FLFGNL LGKYDG+ GIP ++L +G+ M+ LIW VV++A+++V+N LNS Sbjct: 134 GLSLFFLFGNLAFLGKYDGLNGIPVLNLLGKPLQTGREMFYLIWAVVVVAVLAVQNLLNS 193 Query: 190 RTGRAVRALKFGYVMPEAMGVNTVWLKIVIFVYAAMLAGVSGWLYAHLQHAVNPTPFGLK 249 R GRA+RALK G M EAMGVNT W+K+VIFV AA+LA +SG+LYAHLQ AVNPTPFGL Sbjct: 194 RPGRAIRALKGGGTMAEAMGVNTAWMKVVIFVAAAILACISGFLYAHLQRAVNPTPFGLN 253 Query: 250 YGIDYLLMVVVGGAGYVWGALLGAGLITLLGNFLQEWLPAVLGTGGNFEAIVFGIALVLF 309 YGI+YL M VVGG G+VWGA+LGAGL+T+L + LQ LP +LG+ GNFE IVFG+ LVL Sbjct: 254 YGIEYLFMAVVGGVGHVWGAVLGAGLLTILKDSLQNLLPKLLGSTGNFEIIVFGVLLVLL 313 Query: 310 LQYANEGLWPFIQARFPGRPSARAPEEAPALAHKDKP 346 LQYA +G+WPF++ FP P+ARAP +APAL ++KP Sbjct: 314 LQYARDGVWPFLRRLFPSAPAARAPADAPALRQREKP 350 >AGc2606_2 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 272 Score = 312 bits (799), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 167/268 (62%), Positives = 206/268 (76%), Gaps = 4/268 (1%) Query: 335 EEAPALAHKDKPAAGDVILDVKAARKQFGGLVAVNDVSFSVKAGEVVGLIGPNGAGKSTT 394 + AL + P G ++ V RK FGGL AVNDVSF +KAG+++GLIGPNGAGKSTT Sbjct: 7 RDGEALDKRPMPQTGSPLVRVDRVRKAFGGLTAVNDVSFDIKAGQIIGLIGPNGAGKSTT 66 Query: 395 FNLVTGVLPITSGEVNYRGRSIAGLSSRQIASRGIARTFQHVRLVPGMSVLENAAMGAYL 454 FNL+TG+L ++ GEV Y+G+ ++GL+ R IA RGIARTFQH +++P MSVLEN A+GA+L Sbjct: 67 FNLITGILNLSGGEVTYQGQRLSGLNPRLIARRGIARTFQHAKVLPTMSVLENVALGAHL 126 Query: 455 RGDRAAQGGALASVLRLNRKEEDKILLEAKRQLERVGLGDMLYRPAGSLALGQQRILEIA 514 RG+ G S RL R++E +L EA QL+RVGLG RPAG LALGQ RILEIA Sbjct: 127 RGN----AGMFRSFFRLERRQEQALLAEAADQLDRVGLGAHRDRPAGDLALGQIRILEIA 182 Query: 515 RALCCDPALLLLDEPAAGLRYKEKEALSELLRKLRAEGMAVLLVEHDMDFVMQLTDHIVV 574 RALC +P LLLLDEPAAGLR+ EK+ L++LL+KLRAEG++VLLVEHDM FVM L DHIVV Sbjct: 183 RALCLNPTLLLLDEPAAGLRHGEKQELADLLKKLRAEGVSVLLVEHDMGFVMGLVDHIVV 242 Query: 575 MEFGTKIAEGTPAQIQVHPAVLEAYLGG 602 ++FGT IAEG PA I+ HPAV+ AYLGG Sbjct: 243 LDFGTLIAEGKPADIRQHPAVIAAYLGG 270 >DRA0261_2 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 271 Score = 299 bits (766), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 158/260 (60%), Positives = 186/260 (71%), Gaps = 4/260 (1%) Query: 342 HKDKPAAGDVILDVKAARKQFGGLVAVNDVSFSVKAGEVVGLIGPNGAGKSTTFNLVTGV 401 H+ PA G IL V+ A KQFGGL AVNDVSF V AGE+VGLIGPNGAGKST FNLVTGV Sbjct: 13 HRPTPAPGSPILKVRNAVKQFGGLKAVNDVSFDVNAGEIVGLIGPNGAGKSTMFNLVTGV 72 Query: 402 LPITSGEVNYRGRSIAGLSSRQIASRGIARTFQHVRLVPGMSVLENAAMGAYLRGDRAAQ 461 P TSG V G L +R I G+ARTFQHV+L P +S+LEN MG Y RG Q Sbjct: 73 NPATSGTVEVLGHDAGRLPARAIHRLGVARTFQHVKLFPELSLLENTMMGGYARG----Q 128 Query: 462 GGALASVLRLNRKEEDKILLEAKRQLERVGLGDMLYRPAGSLALGQQRILEIARALCCDP 521 G L S+L L R EE + A QLERVGL + Y AG+LALGQQR+LEIARAL DP Sbjct: 129 AGLLRSMLHLERGEEAALQGLALTQLERVGLSEQAYEQAGNLALGQQRLLEIARALVADP 188 Query: 522 ALLLLDEPAAGLRYKEKEALSELLRKLRAEGMAVLLVEHDMDFVMQLTDHIVVMEFGTKI 581 + LLLDEPAAGLR+ EK+ L+ LLRKLR EG+ +L+VEHDMD VM L D +VVM G ++ Sbjct: 189 SFLLLDEPAAGLRFGEKQELATLLRKLRDEGVTILIVEHDMDLVMNLVDRLVVMNSGQEL 248 Query: 582 AEGTPAQIQVHPAVLEAYLG 601 A+G+P Q++ +PAV EAYLG Sbjct: 249 AQGSPQQVRSNPAVREAYLG 268 >AGc2606_1 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 323 Score = 295 bits (754), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 165/308 (53%), Positives = 219/308 (71%) Query: 21 VIVLLVVLALPFLSVPPFWITLLSYVGLYSIVALGLVMLTGVAGLTSFGQAAFVGIGAYT 80 V L +V P L VPPFW+TL + +GL S+VA+GLV+LTGV G+TSFGQAAF G GAYT Sbjct: 16 VAALFLVAIFPLLPVPPFWVTLANNIGLASLVAIGLVLLTGVGGMTSFGQAAFCGFGAYT 75 Query: 81 TAYVTTQFGLSPWIGLLAGVLITGVSALLIGAVTMRISGHFLPLSTIAWGLSLYFLFGNL 140 TA +T+ +G SPW+ L +L+ V AL +G +T+R+SGH+LPL TIAWGL++Y+LFG + Sbjct: 76 TAVLTSAYGFSPWLTLPLSLLVGAVVALPLGLMTVRLSGHYLPLGTIAWGLAIYYLFGRI 135 Query: 141 ESLGKYDGIGGIPSISLFNFEFSSGKSMYVLIWVVVILALVSVKNFLNSRTGRAVRALKF 200 E LG+YDGI GIP +SL S S+Y +IW+ VI + +N L+SR GR +RAL+ Sbjct: 136 ELLGRYDGISGIPPLSLGGEALMSSSSIYYIIWIFVIAVAIGAQNLLDSRVGRGIRALRG 195 Query: 201 GYVMPEAMGVNTVWLKIVIFVYAAMLAGVSGWLYAHLQHAVNPTPFGLKYGIDYLLMVVV 260 G EA GVN K+ +FV+AA++A +SGWLYAH+Q ++NPTPFGL GI Y+LM VV Sbjct: 196 GSQAAEAFGVNIERAKLTVFVFAAVVAALSGWLYAHMQRSINPTPFGLDMGITYMLMAVV 255 Query: 261 GGAGYVWGALLGAGLITLLGNFLQEWLPAVLGTGGNFEAIVFGIALVLFLQYANEGLWPF 320 GG+G V GA+ GA ++ +L LQ LP +LGT NFE IVFG+ LVL LQ + +GLWP Sbjct: 256 GGSGRVVGAIFGASVVLVLKEVLQRVLPGLLGTSVNFEMIVFGVLLVLILQLSRDGLWPL 315 Query: 321 IQARFPGR 328 ++ P R Sbjct: 316 LERYLPAR 323