BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0100.p         (111 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA3914_2 [NT] COG0840 Methyl-accepting chemotaxis protein Mac Me...    61   6e-10

>MA3914_2 [NT] COG0840 Methyl-accepting chemotaxis protein Mac Methanosarcina
           acetivorans str.C2A
          Length = 274

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 2   KQQGKDAALADFSRPTPAFKQRDLYINVIDLSGNTLAHGENAKLIGRNLIDLKDADGKLF 61
            + G++ AL +F+     F     YI   D +G TLA     ++IG    ++ D +G LF
Sbjct: 14  HENGQEVALREFNNQAGQFVDGKFYIFAYDTNGTTLALPFQPEIIGTKRWNVTDTNGTLF 73

Query: 62  IKQFVDTAKGGGKGWIDYRWPNPV-TAVLEEKTTYIEEVN-GLVIGCGIY 109
           I+  VDTA+ GG G++ Y + +P     +++K +Y+  VN   +IG GIY
Sbjct: 74  IQDLVDTAQSGG-GFVRYFYADPADNFTVKQKLSYVMMVNQSWIIGSGIY 122



 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 5   GKDAALADFSRPTPAFKQRDLYINVIDLSGNTLAHGENAKLIGRNLIDLKDADGKLFIKQ 64
           GKD A+ +F+    AF + +LYI   D +G TLA    A+LIG NL +L+D  G  + K 
Sbjct: 158 GKDTAIEEFNDRNGAFVRGNLYIYAFDYNGTTLALPYQAQLIGTNLSELQDPYGVNYTKV 217

Query: 65  FVDTAKGGGKGWIDYRWPNPV-TAVLEEKTTYIEEVNGL-VIGCGIY 109
            +  A+ GG G++ Y + NP     LE K +Y+++V+    +G G Y
Sbjct: 218 EIFMAQQGG-GFLFYHYYNPARNMTLEPKMSYVQKVDDTWWLGAGTY 263