BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0099.p         (166 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3965 [K] COG1522 Transcriptional regulators Pae Pseudomonas ae...   149   3e-36
mll9538 [K] COG1522 Transcriptional regulators Mlo Mesorhizobium...   139   3e-33
CC2535 Non COG                                                        137   8e-33
PA2028 [K] COG1522 Transcriptional regulators Pae Pseudomonas ae...   130   9e-31
DR1894 [K] COG1522 Transcriptional regulators Dra Deinococcus ra...   127   8e-30

>PA3965 [K] COG1522 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 169

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 103/161 (63%), Gaps = 1/161 (0%)

Query: 7   NVTSKMKNSPLDSASQKILAELQKNARISSNELAEKVGMSASPCWRRQKELEDNGYIVRY 66
           N+   +  + LD    +IL ELQ++ARIS+ ELAE++G+S SPC RR K+LED+GYIVR 
Sbjct: 4   NLKEILAMNKLDRYDLRILEELQRDARISNQELAERIGLSPSPCSRRVKQLEDDGYIVRQ 63

Query: 67  TAVVDRRKLGLSVCCLAHISLLRHAEGVVEKFEETMRMRPEVIECYETTGT-ADYMVKVI 125
            A++DR+KLGLS+     I + RH     E F+E +   PEV+EC   TG  ADY +KV+
Sbjct: 64  VALLDRKKLGLSLTAFVLIGMDRHTPERFEHFQEVIGKCPEVLECSLVTGMDADYQLKVV 123

Query: 126 VPDMDAYHDFLHNVLVKLNGVSQVNTSVALREVKYETALPI 166
           VPDMD Y   L   L ++ GVS V +S  L +V   T LP+
Sbjct: 124 VPDMDHYQKLLLGTLTRIEGVSSVRSSFVLNQVLASTELPL 164


>mll9538 [K] COG1522 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 155

 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 101/154 (65%)

Query: 12  MKNSPLDSASQKILAELQKNARISSNELAEKVGMSASPCWRRQKELEDNGYIVRYTAVVD 71
           M N  LD+   KI+A LQKNA+ ++N+LAE VG+S SPC RR + LE  G I  YT V+D
Sbjct: 1   MPNPTLDAIDLKIIAALQKNAKATTNDLAEAVGLSPSPCARRVRLLERAGVIKGYTVVLD 60

Query: 72  RRKLGLSVCCLAHISLLRHAEGVVEKFEETMRMRPEVIECYETTGTADYMVKVIVPDMDA 131
           ++KLGL +   A I L R  E  +++F + +   PEV++CY  TG  DY+++++V D++A
Sbjct: 61  QKKLGLPISAFASIKLERQREDDLDRFSQAVLRWPEVVDCYLMTGQRDYLMRIVVRDLEA 120

Query: 132 YHDFLHNVLVKLNGVSQVNTSVALREVKYETALP 165
           Y  F+ + L +L+ ++ + +S AL +VK   ALP
Sbjct: 121 YERFIKDKLTRLDNIASIESSFALGQVKRSEALP 154


>CC2535 Non COG
          Length = 194

 Score =  137 bits (346), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 100/162 (61%)

Query: 5   FPNVTSKMKNSPLDSASQKILAELQKNARISSNELAEKVGMSASPCWRRQKELEDNGYIV 64
           + N T K     L  A +KIL  LQ++ +IS+ +LAE+VG+S SPC RR K+LE +G I 
Sbjct: 29  YANFTWKPVTMKLTRADRKILQILQEDGKISNVDLAERVGLSPSPCLRRVKQLEASGLIR 88

Query: 65  RYTAVVDRRKLGLSVCCLAHISLLRHAEGVVEKFEETMRMRPEVIECYETTGTADYMVKV 124
            Y A++DRRK  L V     + + RH+E   E F++ +   PEV+ CY  TG  DY+++V
Sbjct: 89  GYVALLDRRKAKLDVLAYVEVQVDRHSEEAAEAFQQAVLREPEVVGCYAMTGGYDYLLRV 148

Query: 125 IVPDMDAYHDFLHNVLVKLNGVSQVNTSVALREVKYETALPI 166
           +VP +DAY DF    L+K+  V  V +S  L  +K +TALP+
Sbjct: 149 VVPSLDAYADFTMKRLLKMPAVKDVRSSFVLDTIKDQTALPL 190


>PA2028 [K] COG1522 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 157

 Score =  130 bits (328), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 94/151 (62%)

Query: 16  PLDSASQKILAELQKNARISSNELAEKVGMSASPCWRRQKELEDNGYIVRYTAVVDRRKL 75
           PLD   Q+ILA LQ+ + +S+ E+AE++G+S SPCWRR + L++ G I +   ++DR+K+
Sbjct: 4   PLDIYDQRILALLQEESSLSTAEIAERIGLSQSPCWRRIQRLKEEGVIRKQVTLLDRKKI 63

Query: 76  GLSVCCLAHISLLRHAEGVVEKFEETMRMRPEVIECYETTGTADYMVKVIVPDMDAYHDF 135
           GL+    A I L  H    +  F E M   PEV+EC+   G  D+M++++  D+++Y  F
Sbjct: 64  GLNTQVFAQIKLNAHGRKNLTDFAEAMHQFPEVLECHVLMGAVDFMLRIVTRDIESYERF 123

Query: 136 LHNVLVKLNGVSQVNTSVALREVKYETALPI 166
               L  + G+ +VN+ VAL E+K  T LP+
Sbjct: 124 FFEKLSAVPGIQEVNSIVALSEIKSTTTLPL 154


>DR1894 [K] COG1522 Transcriptional regulators Dra Deinococcus radiodurans
          Length = 195

 Score =  127 bits (320), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 99/150 (66%)

Query: 17  LDSASQKILAELQKNARISSNELAEKVGMSASPCWRRQKELEDNGYIVRYTAVVDRRKLG 76
           LD   ++IL+ LQ++ARI++ ELA+++G++ +P  RR + LE+ G I RY A++D + + 
Sbjct: 43  LDPTDRQILSILQRDARIANTELADEIGLTPAPTLRRVRRLEEEGVIHRYVALLDPKLVN 102

Query: 77  LSVCCLAHISLLRHAEGVVEKFEETMRMRPEVIECYETTGTADYMVKVIVPDMDAYHDFL 136
             +  +  ++L +  +   + F E MR RPEV+ECY   G  DY++KV VP++DAY  FL
Sbjct: 103 RDLMVMVRVTLDKQTKQGFQDFAEHMRARPEVLECYLCLGDTDYLLKVCVPNLDAYQRFL 162

Query: 137 HNVLVKLNGVSQVNTSVALREVKYETALPI 166
            +VL  + GV   ++++ +++ KY T+LP+
Sbjct: 163 VDVLAAIPGVRNTDSTIVVKQEKYTTSLPL 192