BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0096.p (538 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3122_2 [C] COG1014 Pyruvate Rso Ralstonia solanacearum 332 1e-90 mlr5175_2 [C] COG1014 Pyruvate Mlo Mesorhizobium loti 319 9e-87 CC3176_2 [C] COG1014 Pyruvate Ccr Caulobacter vibrioides 291 3e-78 mlr5175_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, ... 119 1e-26 RSc3122_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, ... 116 1e-25 >RSc3122_2 [C] COG1014 Pyruvate Rso Ralstonia solanacearum Length = 425 Score = 332 bits (851), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 188/417 (45%), Positives = 250/417 (59%), Gaps = 8/417 (1%) Query: 116 MAAHLEGKGASTLDFMGFAQKGGAVLSHVRIAASPAALNQVRIDLQQADAVFACDLVVSA 175 MAAH+EGKG + LD G AQKGGAVLSHV+I P ++ RI + +AD V CD +VSA Sbjct: 1 MAAHIEGKGVTVLDMAGLAQKGGAVLSHVQIGERPDTIHATRIAMGEADLVIGCDAIVSA 60 Query: 176 MQEGLSVMRRGHTKVIANDREIPTADFTRDPDASINKDGLLEKLAASAGADNVVQIDAQA 235 E LS ++ G T+ I N PTADF ++P+ + A+ G D DA A Sbjct: 61 SDEVLSKVQFGQTRAIVNSAATPTADFIKNPNWRFPGSSAEADIRAAVG-DACAFEDASA 119 Query: 236 TALRFLGDPIGGNILLMGYAWQRGLVPVGLPALMRAIELNGVAIDMNKRAFTLGRLAAAD 295 A+R LGD I N L++G+AWQ+G +P+ AL+RAIELNGV++D NK AF GR A D Sbjct: 120 LAVRLLGDAIYTNPLVLGFAWQKGWIPLTYDALLRAIELNGVSVDKNKTAFEWGRHLAHD 179 Query: 296 AAALDKL--GKPKQQVIQFAAPKSLADTVAFRIDFLTKYQNCAYARRYEEAVAAVERAEA 353 A+ L P+ + A P +L +A R+D LT YQN AYA + V V AEA Sbjct: 180 REAVLALAGAAPRAKAEVIALPATLDTLIARRVDLLTAYQNAAYADAFRVVVERVRTAEA 239 Query: 354 SLEGNASRRPISKMVARNLFKLMAYKDEYEVARLHADPVFREQVAAQFDG----DYKLAF 409 ++ G +++ VARNL +LMAYKDEYEVARL+ DP F +++ AQFDG DY+L F Sbjct: 240 AVAGAGQPLTLTEAVARNLSRLMAYKDEYEVARLYTDPAFLDKLRAQFDGEPGRDYQLNF 299 Query: 410 HLAPPMLARKKPGSDVPAKIRFGALMMSGFAVLSRFKSMRGTPLDVFGYTEERRRERALR 469 LAPP+ A++ + K RFG M F +L++ + +RGT LDVFG TEERR ERAL Sbjct: 300 WLAPPLWAKRDEKGHL-VKQRFGPNTMRIFKLLAKLRGLRGTALDVFGKTEERRTERALI 358 Query: 470 DRYLNFVLALADQLNAGNKGAALKLAQLPEQVRGYGHVKLAAMDKADREWDGLMGEF 526 Y V L L+ A+ LA+LPE +RG+GHVK A + A W L+ ++ Sbjct: 359 GEYRALVDELVSGLSTQKLALAIDLARLPEDIRGFGHVKEANLAAARVRWGKLLAQW 415 >mlr5175_2 [C] COG1014 Pyruvate Mlo Mesorhizobium loti Length = 435 Score = 319 bits (818), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 183/424 (43%), Positives = 257/424 (60%), Gaps = 8/424 (1%) Query: 103 GGTGVVTVGALITMAAHLEGKGASTLDFMGFAQKGGAVLSHVRIAASPAALNQVRIDLQQ 162 GGTGVVTVGA++ MAAHLE KG +D G AQKGG+V +HVRIA +P ++ +R+ + Sbjct: 1 GGTGVVTVGAVLGMAAHLEDKGCGMIDMAGLAQKGGSVFTHVRIARTPDDIHAIRVSAGK 60 Query: 163 ADAVFACDLVVSAMQEGLSVMRRGHTKVIANDREIPTADFTRDPDASINKDGLLEKLAAS 222 AD V CDLVVS ++ L+ +R GHT +AN EI +F R D S+ + L + + A+ Sbjct: 61 ADLVLGCDLVVSGAKKVLTAVREGHTIFLANTAEIMPGEFARSADFSLPIERLKKAIRAA 120 Query: 223 AGADNVVQIDAQATALRFLGDPIGGNILLMGYAWQRGLVPVGLPALMRAIELNGVAIDMN 282 AG D DA TA G+ +G N+ ++G+A+Q G +P+ A+ RAIELNG A+ MN Sbjct: 121 AGDDKAHFFDATRTATALFGNSLGANMFMLGFAFQHGGLPLSAEAVERAIELNGEAVAMN 180 Query: 283 KRAFTLGRLAAADAAALDKL-GKPKQQVIQFAAPKSLADTVAFRIDFLTKYQNCAYARRY 341 AF GR AA + L +P + ++L + +A R+ FLT YQN AY +RY Sbjct: 181 IAAFRWGRRAAHQPDFVRGLVAQPGRAGETAPVAQTLDEIIARRVAFLTAYQNAAYGKRY 240 Query: 342 EEAVAAVERAEA-SLEGNASRRPISKMVARNLFKLMAYKDEYEVARLHADPVFREQVAAQ 400 + + + AE ++ G+ + +++ ARNLFKLMA KDEYEVARL+ D F ++ Q Sbjct: 241 ADRLTLLRAAETRAVPGSTA---VTEAAARNLFKLMAIKDEYEVARLYTDGSFAAELGKQ 297 Query: 401 FDGDYKLAFHLAPPMLARKKPGSD-VPAKIRFGALMMSGFAVLSRFKSMRGTPLDVFGYT 459 F KL FHLAPP++ R+ G+D P K FG MM GF +L+ K +RGT D+FGYT Sbjct: 298 FQSYEKLEFHLAPPIMGRR--GNDGTPRKSSFGPWMMKGFRLLAALKGLRGTAFDLFGYT 355 Query: 460 EERRRERALRDRYLNFVLALADQLNAGNKGAALKLAQLPEQVRGYGHVKLAAMDKADREW 519 ERR ER L +Y + +A+ L G AA+ L +P +RGYGHV+ A+ +KA E Sbjct: 356 AERRMERQLLAQYEGDLELVANSLAPGKADAAVALVSVPALIRGYGHVRQASAEKAAGER 415 Query: 520 DGLM 523 L+ Sbjct: 416 QRLL 419 >CC3176_2 [C] COG1014 Pyruvate Ccr Caulobacter vibrioides Length = 419 Score = 291 bits (744), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 169/411 (41%), Positives = 238/411 (57%), Gaps = 9/411 (2%) Query: 103 GGTGVVTVGALITMAAHLEGKGASTLDFMGFAQKGGAVLSHVRIAASPAALNQVRIDLQQ 162 GGTGV TV +++ MAAH++G+ S +D G AQKGG+V SHV+I + + R+ Sbjct: 1 GGTGVTTVASIMAMAAHIDGRAGSVVDMTGLAQKGGSVFSHVKIGKTEETIVGGRVPAAS 60 Query: 163 ADAVFACDLVVSAMQEGLSVMRRGHTKVIANDREIPTADFTRDPDASINKDGLLEKLAAS 222 AD + ACDL+V+A EGLS+ + T+ N PTADF D + + ++ + Sbjct: 61 ADVLIACDLLVAASPEGLSLYAKDRTRAFGNSDFAPTADFVTSRDVRFDSGAMARRVKGA 120 Query: 223 AGADNVVQIDAQATALRFLGDPIGGNILLMGYAWQRGLVPVGLPALMRAIELNGVAIDMN 282 + AQ A GD I N++++G+AWQRG++P+ A+ RAI+LNGV + N Sbjct: 121 TKTFDACP--AQRLAETEFGDAIYANMIMVGFAWQRGVIPLSSRAVYRAIKLNGVDAEAN 178 Query: 283 KRAFTLGRLAAADAAALDKLGKPKQQVIQFAAPKSLADTVAFRIDFLTKYQNCAYARRYE 342 +AF LGR A D + L K+ L +A RI LT YQN AYA+RY Sbjct: 179 LQAFELGRRVAHDPSTL----TVKEDTTPTPETMPLDALIAHRIAQLTAYQNAAYAQRYA 234 Query: 343 EAVAAVERAEASLEGNASRRPISKMVARNLFKLMAYKDEYEVARLHADPVFREQVAAQFD 402 + VA V AE ++ G P+++ A NL+KLMAYKDEYEVARL+ D F ++A F Sbjct: 235 DKVAKVRAAETAVSGEDGALPLTRAAAVNLYKLMAYKDEYEVARLYTDGRFAAELAGTFK 294 Query: 403 GDYKLAFHLAPPMLARKKPGSDVPAKIRFGALMMS-GFAVLSRFKSMRGTPLDVFGYTEE 461 G K LAPP+LA K P P KI FG M+ F ++++ K +RGT LD+FG TEE Sbjct: 295 GG-KAKVWLAPPLLAPKGPDGK-PKKIAFGGWMLDLAFPMMAKMKGLRGTALDIFGKTEE 352 Query: 462 RRRERALRDRYLNFVLALADQLNAGNKGAALKLAQLPEQVRGYGHVKLAAM 512 RR ER L Y + LA L A + A+K+A++P+ +RG+GHVK A++ Sbjct: 353 RRMERGLIASYETGLDRLAAGLKAESLPLAVKIAEVPQAIRGFGHVKEASV 403 >mlr5175_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Mlo Mesorhizobium loti Length = 724 Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 54/87 (62%), Positives = 64/87 (73%), Gaps = 4/87 (4%) Query: 1 MMINPAVCEGCGDCGVQSNCLSILPLETELGRKRQIEQSSCNKDYSCVEGFCPSFVSVLG 60 + IN +CEGCGDCGVQSNC+SI P+ETE GRKR+I+QSSCNKD+SCV GFCPSFV+V G Sbjct: 626 VFINELICEGCGDCGVQSNCVSIQPVETEFGRKRRIDQSSCNKDFSCVNGFCPSFVTVHG 685 Query: 61 GTLKKPESVKLTLADLEATLAAYPTPA 87 ++K E LA L PTPA Sbjct: 686 AKIRKAEG----LAGKTDPLDGVPTPA 708 >RSc3122_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Rso Ralstonia solanacearum Length = 762 Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 49/67 (73%), Positives = 56/67 (83%) Query: 2 MINPAVCEGCGDCGVQSNCLSILPLETELGRKRQIEQSSCNKDYSCVEGFCPSFVSVLGG 61 IN AVCEGCGDC V+SNCLS+ PLETELG KR+I QSSCNKD+SCV GFCPSFV+ G Sbjct: 653 FINDAVCEGCGDCSVKSNCLSVEPLETELGTKRKINQSSCNKDFSCVNGFCPSFVTAEGA 712 Query: 62 TLKKPES 68 ++KPES Sbjct: 713 QVRKPES 719