BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0088.p         (90 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1952 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid...   103   1e-22
HP1045 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ...    94   9e-20
Cj1537c [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid...    88   5e-18
acs [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid lig...    80   9e-16
Zacs [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid li...    80   9e-16

>RSc1952 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
           Rso Ralstonia solanacearum
          Length = 660

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 49/49 (100%)

Query: 1   VQHASGGYLLWAVLTMKWTFDIKPDDIYWCTADIGWITGHTYIAYGPLA 49
           VQH++GGYLLWA+LTM+WTFD+KPDD++WCTADIGW+TGHTYIAYGPLA
Sbjct: 280 VQHSTGGYLLWALLTMQWTFDLKPDDVFWCTADIGWVTGHTYIAYGPLA 328


>HP1045 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
           Hpy Helicobacter pylori 26695
          Length = 662

 Score = 93.6 bits (231), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/49 (73%), Positives = 43/49 (87%)

Query: 1   VQHASGGYLLWAVLTMKWTFDIKPDDIYWCTADIGWITGHTYIAYGPLA 49
           VQH+S GYLLWA +TM+W FDI+ +D +WCTADIGWITGHTY+ YGPLA
Sbjct: 280 VQHSSAGYLLWAQMTMEWVFDIRDNDNFWCTADIGWITGHTYVVYGPLA 328


>Cj1537c [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
           Cje Campylobacter jejuni
          Length = 657

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 41/49 (83%)

Query: 1   VQHASGGYLLWAVLTMKWTFDIKPDDIYWCTADIGWITGHTYIAYGPLA 49
           V HAS GY+LWA +TM+W FDIK  D YWC+AD+GWITGHTY+ YGPLA
Sbjct: 274 VMHASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLA 322


>acs [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
           Eco Escherichia coli K12
          Length = 652

 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 40/49 (81%)

Query: 1   VQHASGGYLLWAVLTMKWTFDIKPDDIYWCTADIGWITGHTYIAYGPLA 49
           V H +GGYL++A LT K+ FD  P DIYWCTAD+GW+TGH+Y+ YGPLA
Sbjct: 274 VLHTTGGYLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLA 322


>Zacs [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
           EcZ Escherichia coli O157:H7 EDL933
          Length = 652

 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 40/49 (81%)

Query: 1   VQHASGGYLLWAVLTMKWTFDIKPDDIYWCTADIGWITGHTYIAYGPLA 49
           V H +GGYL++A LT K+ FD  P DIYWCTAD+GW+TGH+Y+ YGPLA
Sbjct: 274 VLHTTGGYLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLA 322