BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0072.p         (232 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2034 [QR] COG0500 SAM-dependent methyltransferases Pae Pseudom...    95   2e-19
BH0658 [QR] COG0500 SAM-dependent methyltransferases Bha Bacillu...    89   8e-18
SMa2347 [QR] COG0500 SAM-dependent methyltransferases Sme Sinorh...    87   2e-17

>PA2034 [QR] COG0500 SAM-dependent methyltransferases Pae Pseudomonas
           aeruginosa
          Length = 224

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 10  FNQQAASAYDSQWARLAPFRDALHLLATA-VLAELPADARILCVGAGTGAEIVFLAEKFP 68
           F  + A  Y+++  RL P  + LHLL+ A +LA LP  AR+L VG G G E+  LA   P
Sbjct: 4   FVGKQADGYETRIGRLLPGYELLHLLSRAQLLARLPERARLLSVGCGAGGELAELAGLRP 63

Query: 69  AWRFTAVEPSGPMLEVFRRKAQEQGIASRCTFHEGYLDSLPQGEPFDAATSLLVSHFILQ 128
            WRF A + S  ML + R++    G+  R   H G +  LP   P DAA  LLV HF+  
Sbjct: 64  GWRFVAADLSADMLALARQRCARLGLLERIELHCGDVAGLPPAPPCDAALVLLVLHFLRG 123

Query: 129 QDERAGFFRGIRQRLCSNGILINSDLTSDTDAPHYGALLEVWMRTMAGADLGQEKLEQMR 188
              +  F   + +RL     L+ ++L    DA       E     +AG  L  E  + M 
Sbjct: 124 DQAKRRFLEAVAERLAPAAPLLLANLMEARDAFERPVQAEAC--RLAG--LSPEDSDGML 179

Query: 189 AAYRRDVAILAPEIVAGIIASGGFDTPVQFYQCGLIHGWFA 229
              R D   L+ + +  ++   GF  P +++Q      W A
Sbjct: 180 QRLREDFDPLSEQRLGELLEDTGFVLPSRYFQAVGYQAWIA 220


>BH0658 [QR] COG0500 SAM-dependent methyltransferases Bha Bacillus
           halodurans
          Length = 232

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 3/229 (1%)

Query: 6   LQATFNQQAASAYDSQWARLAPFRDAL-HLLATAVLAELPAD-ARILCVGAGTGAEIVFL 63
           L+ +F+ +   AY+       P  D L  ++ +    +L    A +L VGAG G E+   
Sbjct: 3   LEFSFDAKMGLAYEKNTRISVPTYDTLFEMIQSYFRMQLGEKVASVLVVGAGGGNELSAW 62

Query: 64  AEKFPAWRFTAVEPSGPMLEVFRRKAQEQGIASRCTFHEGYLDSLPQGE-PFDAATSLLV 122
               P W FT V+P+  ML++ ++KA + G+ SR    +G +  LP+ +  FDAA+ +LV
Sbjct: 63  GPTNPNWTFTGVDPTVEMLKLAQQKAVQLGLESRVRLIQGTIGDLPRHDGTFDAASCILV 122

Query: 123 SHFILQQDERAGFFRGIRQRLCSNGILINSDLTSDTDAPHYGALLEVWMRTMAGADLGQE 182
            HFI  + E+      ++  L      +      D D+      + VW      A     
Sbjct: 123 LHFIHDEQEKLELLETVKAHLKPGAPFVLVSAYGDRDSGELQDRINVWKSFFLDAGKEPA 182

Query: 183 KLEQMRAAYRRDVAILAPEIVAGIIASGGFDTPVQFYQCGLIHGWFARA 231
            +++M       ++ L    +  ++A  GF +  +FY  GL  GW   A
Sbjct: 183 IVDEMVPKVLTQISFLPERQITSLLAEAGFTSITRFYSTGLFAGWICHA 231


>SMa2347 [QR] COG0500 SAM-dependent methyltransferases Sme Sinorhizobium
           meliloti
          Length = 245

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 101/224 (45%), Gaps = 10/224 (4%)

Query: 10  FNQQAASAYDSQWARLAPFRDALHLLATAVLAE-LPADARILCVGAGTGAEIVFLAEKFP 68
           F    AS+Y    +R  P   ALH + + ++AE  P  AR+L +GAG G E+  LA++  
Sbjct: 30  FTAAHASSYVEGTSRKVPGLAALHRMTSMLVAERAPVQARVLVLGAGGGMELKALADENS 89

Query: 69  AWRFTAVEPSGPMLEVFRRKAQEQGIASRCTFHEGYLDSLPQGEPFDAATSLLVSHFILQ 128
            W F  ++PS  ML V  +      +  R    +GY+ + P+G PFDAA  LL  HF+  
Sbjct: 90  DWSFCGIDPSADMLRVAEQTVGPHLL--RVHLQQGYIGAAPEG-PFDAAVCLLTLHFV-G 145

Query: 129 QDERAGFFRGIRQRLCSNGILINSDLTSDTDAPHYGALLEVWM-RTMAGADLGQEKLEQM 187
           + +R      IR+RL      + + ++     P        W+ R +A       + E  
Sbjct: 146 RAQRLDTLEQIRRRLVPGAPFVVAHISFPQSEPER----STWIARHVAFGGTASGEAESA 201

Query: 188 RAAYRRDVAILAPEIVAGIIASGGFDTPVQFYQCGLIHGWFARA 231
           R A    +++L+PE    ++   GF     FY      GW   A
Sbjct: 202 RQAIATKLSVLSPEEDEAVLRKAGFSDVRLFYAAMTFRGWVGYA 245