BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0060.p         (156 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1602 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, s...   196   1e-50
SMb20403 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase,...   181   8e-46
mll3837 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...   162   2e-40
CC0022 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, s...   162   3e-40
CC2270 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, s...   160   8e-40

>PA1602 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Pae Pseudomonas aeruginosa
          Length = 163

 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 111/146 (76%), Gaps = 1/146 (0%)

Query: 6   FTVNGKARSVDVRDPEQPLLYALRNNIGLTGPKFGCGLGQCGACTVLLDQTPLRSCVTPL 65
            TVNG++  +DV  P+ PLLY LRN++ L GPKFGCGLG+CGACTVL+D    RSC+TP+
Sbjct: 7   LTVNGQSLRLDVA-PDTPLLYVLRNDLQLNGPKFGCGLGECGACTVLMDGVATRSCITPV 65

Query: 66  SAVAGKSITTIEGLGTPDKPHPVQAAFIAEQAAQCGYCANGMVMTSAALLASNPKPSEAE 125
            A  G+ + T+EGLG    PHP+Q AFI EQAAQCGYC NGMVMT+ ALL  NP PS+ E
Sbjct: 66  EAAVGRRVVTLEGLGDAAHPHPLQQAFIDEQAAQCGYCINGMVMTAKALLDRNPNPSDGE 125

Query: 126 IKDALSANLCRCGTHVRILRAVMRAS 151
           I+  L+ NLCRCGTHV IL+AV RA+
Sbjct: 126 IRQELAYNLCRCGTHVEILKAVRRAA 151


>SMb20403 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Sme Sinorhizobium meliloti
          Length = 165

 Score =  181 bits (458), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/147 (57%), Positives = 109/147 (74%), Gaps = 1/147 (0%)

Query: 4   INFTVNGKARSVDVRDPEQPLLYALRNNIGLTGPKFGCGLGQCGACTVLLDQTPLRSCVT 63
           I+ TVNG    +D  DP  PLLY LR+ + L G K+GCGLGQCG+CTV++D   + SC+ 
Sbjct: 2   ISLTVNGSPHQIDA-DPATPLLYVLRDELALNGAKYGCGLGQCGSCTVVVDGEAVLSCMV 60

Query: 64  PLSAVAGKSITTIEGLGTPDKPHPVQAAFIAEQAAQCGYCANGMVMTSAALLASNPKPSE 123
           P+  + G+ ITTIEGLGT D+P P+Q AFI  QAAQCGYC  GM+M++ ALL  N +PSE
Sbjct: 61  PIMLLEGREITTIEGLGTIDEPGPLQEAFIELQAAQCGYCIPGMMMSAHALLRRNAQPSE 120

Query: 124 AEIKDALSANLCRCGTHVRILRAVMRA 150
            EI++AL+ NLCRCGTH+RIL A+ RA
Sbjct: 121 EEIREALATNLCRCGTHMRILAAIRRA 147


>mll3837 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Mlo Mesorhizobium loti
          Length = 153

 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 107/148 (72%), Gaps = 2/148 (1%)

Query: 4   INFTVNGKARSVDVRDPEQPLLYALRNNIGLTGPKFGCGLGQCGACTVLLDQTPLRSCVT 63
           +  TV+G++  +D  DP+ PLL+ALR+ IG TGPKFGCG+  CGACTV +D  P+RSC  
Sbjct: 1   MRLTVDGQSFDIDA-DPDMPLLWALRDLIGKTGPKFGCGIAACGACTVHVDGQPVRSCSL 59

Query: 64  PLSAVAGKSITTIEGLGTPDKPHPVQAAFIAEQAAQCGYCANGMVMTSAALLASNPKPSE 123
           P+  V+G +++TIEG+GT D+ HPVQ A++ EQ AQCGYC  G +M++ ALL     PS+
Sbjct: 60  PVGQVSG-AVSTIEGIGTADRLHPVQQAWLEEQVAQCGYCQAGQIMSAVALLDEVADPSD 118

Query: 124 AEIKDALSANLCRCGTHVRILRAVMRAS 151
           A+I +A   NLCRCGT+ +I  A+ +A+
Sbjct: 119 ADIDNATGGNLCRCGTYPKIRSAIRKAA 146


>CC0022 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Ccr Caulobacter vibrioides
          Length = 174

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/152 (50%), Positives = 102/152 (67%), Gaps = 4/152 (2%)

Query: 4   INFTVNGKARSVDVRDPEQPLLYALRNNIGLTGPKFGCGLGQCGACTVLLDQTPLRSCVT 63
           +   +NGK  SV    PE PLL+ LR+ +G+TG KFGCGL QCGACTV +D  P+RSCVT
Sbjct: 1   MTLDINGKPVSVQAA-PETPLLWVLRDELGMTGTKFGCGLAQCGACTVHMDGQPIRSCVT 59

Query: 64  PLSAVAGKSITTIEGLGTPDKPHPVQAAFIAEQAAQCGYCANGMVMTSAALLASNPKPSE 123
           P+ AV    +TTIEGLG     HPVQ A++     QCGYC +G +M++ ALLA  PKPS+
Sbjct: 60  PIEAVGAAKVTTIEGLG---GQHPVQQAWVRHDVPQCGYCQSGQIMSACALLAQKPKPSD 116

Query: 124 AEIKDALSANLCRCGTHVRILRAVMRASGRTP 155
            +I +A++ N+CRCG + RI  A+  A+   P
Sbjct: 117 QDIDEAMAGNICRCGAYQRIRAAIKDAADFGP 148


>CC2270 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Ccr Caulobacter vibrioides
          Length = 154

 Score =  160 bits (406), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 104/153 (67%), Gaps = 1/153 (0%)

Query: 4   INFTVNGKARSVDVRDPEQPLLYALRNNIGLTGPKFGCGLGQCGACTVLLDQTPLRSCVT 63
            N TVNG++R  DV D + PLL+ LR+ +GL G K+GCG   CGACTV LD  P+R+CVT
Sbjct: 3   FNLTVNGESRIADV-DGDTPLLWVLRDTLGLVGTKYGCGAALCGACTVHLDGVPVRACVT 61

Query: 64  PLSAVAGKSITTIEGLGTPDKPHPVQAAFIAEQAAQCGYCANGMVMTSAALLASNPKPSE 123
           P+S V  + +TTIEG+G       VQAA+ A    QCGYC  G +M++ ALLA+ PKP++
Sbjct: 62  PISGVGEQKVTTIEGVGKTTVGAKVQAAWKAVDTPQCGYCQAGQIMSATALLATTPKPTD 121

Query: 124 AEIKDALSANLCRCGTHVRILRAVMRASGRTPA 156
            EI  A++ NLCRC T++RI +A+  A+G   A
Sbjct: 122 EEIDAAMNGNLCRCATYIRIKKAIKVAAGLEKA 154