BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0020.p         (149 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2529 [U] COG0848 Biopolymer transport protein Rso Ralstonia s...   160   8e-40
XF1080 [U] COG0848 Biopolymer transport protein Xfa Xylella fast...    77   1e-14
PA2982 [U] COG0848 Biopolymer transport protein Pae Pseudomonas ...    76   3e-14
all5046 [U] COG0848 Biopolymer transport protein Nos Nostoc sp. ...    59   5e-09

>RSc2529 [U] COG0848 Biopolymer transport protein Rso Ralstonia solanacearum
          Length = 143

 Score =  160 bits (406), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 81/147 (55%), Positives = 105/147 (71%), Gaps = 8/147 (5%)

Query: 1   MNFRKGRAREELEINLIPFIDVLLVIVIFLMVTTTYSKFTALQITLPTANAEKALEQPFE 60
           M FR   AREE EINLIP IDVLLVI+IFLM+TTTYS++T L++ LPTA+A KA E+P +
Sbjct: 1   MRFRPRHAREEPEINLIPLIDVLLVILIFLMITTTYSRYTELKVNLPTADAAKATERPGQ 60

Query: 61  LNVAVDAQGRYAINNVQIAARDAAGLARELQSAVQANSANTDTSGGKPDPVVIINADALA 120
           + V++ A G Y+++   +  RD   L+  L+SA          SGG P+PVV+INADA A
Sbjct: 61  IVVSITANGVYSVDKQVLDTRDVTSLSDALRSAAG--------SGGGPEPVVVINADAQA 112

Query: 121 AHQTVINVLEAARTAGFAKVTFAAQTG 147
           AHQ V+NV+EAAR AG + +TFA QTG
Sbjct: 113 AHQAVVNVMEAARVAGLSHLTFATQTG 139


>XF1080 [U] COG0848 Biopolymer transport protein Xfa Xylella fastidiosa
           9a5c
          Length = 145

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 10/143 (6%)

Query: 1   MNFRKGRAREELEINLIPFIDVLLVIVIFLMVTTTYSKFTALQITLPTANAEKALEQPFE 60
           M     R  +E  I+L+P IDV+LV++IF +VTTT+   + LQ+ LP A+ +        
Sbjct: 1   MRIGNQRLEDEPHIDLVPLIDVILVLIIFFVVTTTFDARSTLQLQLPNASDQHKSVPSKA 60

Query: 61  LNVAVDAQGRYAINNVQIAARDAAGLARELQSAVQANSANTDTSGGKPDPVVIINADALA 120
           L++ V+A G Y IN+ ++   D   L R +           D +G   +  V++ ADA  
Sbjct: 61  LSILVNADGHYFINDHEVLRTDVESLKRSI----------ADVAGDDREQTVLLRADART 110

Query: 121 AHQTVINVLEAARTAGFAKVTFA 143
            +Q V+ V +A    GF  +  A
Sbjct: 111 PYQAVVTVQDALGQLGFRHIAIA 133


>PA2982 [U] COG0848 Biopolymer transport protein Pae Pseudomonas aeruginosa
          Length = 146

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 79/132 (59%), Gaps = 11/132 (8%)

Query: 10  EELEINLIPFIDVLLVIVIFLMVTTTYSKFTALQITLPTANA-EKALEQPFELNVAVDAQ 68
           E++ INL   IDV+ V+++F +V+TT+++   L I LP+A + E A  +  +L ++VDA+
Sbjct: 13  EDVFINLASLIDVIFVLLLFFVVSTTFTRPEQLNIELPSAESGETAGTEQKQLELSVDAE 72

Query: 69  GRYAINNVQIAARDAAGLARELQSAVQANSANTDTSGGKPDPVVIINADALAAHQTVINV 128
           G YA+N   +A  D A     L +A+Q  SA      G  +  V+I+ADA + HQ+V+  
Sbjct: 73  GHYALNGQALAKSDLA----TLMAAMQRESA------GDNNLPVVISADAKSTHQSVVTA 122

Query: 129 LEAARTAGFAKV 140
           ++AA   GF  +
Sbjct: 123 MDAAGKLGFVHL 134


>all5046 [U] COG0848 Biopolymer transport protein Nos Nostoc sp. PCC 7120
          Length = 134

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 14/134 (10%)

Query: 13  EINLIPFIDVLLVIVIFLMVTTTY-SKFTALQITLPTANAEKALEQPFELNVAVDAQGRY 71
           +IN++P IDV+  I+ F +++T + ++   L + LP A   K  + P ++ + VD QG  
Sbjct: 12  QINIVPMIDVIFAILTFFIMSTLFLTRSEGLPVNLPKAATAKQQQVPAKITITVDEQGVV 71

Query: 72  AINNVQIAARDAAGLARELQSAVQANSANTDTSGGKPDPVVIINADALAAHQTVINVLEA 131
           ++N   I     AG  R L              G   + +V+INAD    H  V+ +++ 
Sbjct: 72  SLNRQPILVDAVAGQLRNL-------------VGTNQEALVVINADEKVGHGKVVAIMDQ 118

Query: 132 ARTAGFAKVTFAAQ 145
            R    AK+  A Q
Sbjct: 119 VRQVQGAKLAIATQ 132