BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0008.p (453 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc00808 [P] COG2059 Chromate transport protein ChrA Sme Sinorhi... 367 e-101 mlr5407 [P] COG2059 Chromate transport protein ChrA Mlo Mesorhiz... 364 e-100 CC1097 [P] COG2059 Chromate transport protein ChrA Ccr Caulobact... 224 2e-58 MJ0718 [P] COG2059 Chromate transport protein ChrA Mja Methanoco... 121 3e-27 RSp0555 [P] COG2059 Chromate transport protein ChrA Rso Ralstoni... 109 1e-23 >SMc00808 [P] COG2059 Chromate transport protein ChrA Sme Sinorhizobium meliloti Length = 480 Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust. Identities = 217/459 (47%), Positives = 296/459 (64%), Gaps = 26/459 (5%) Query: 8 SPANDDISPSVNFREAFLFWLKLGFISFGGPAGQISIMHQELVENRRWISERRFLHALNY 67 S +S ++F EA W ++ +SFGGPAGQI++MH+ +VE +RWI E RFLHALNY Sbjct: 21 SAQGQALSHGISFGEALRVWARVAALSFGGPAGQIAMMHRIIVEEKRWIGETRFLHALNY 80 Query: 68 CMLLPGPEAQQLATYIGWLMHRTFGGIVAGVLFVFPSLLILIILSWLYIAFGHLPVVEGL 127 C LLPGPEAQQLA YIGWLMH+T GG+VAG LFV P + +++LSW+Y FG++ V+ L Sbjct: 81 CTLLPGPEAQQLAIYIGWLMHKTKGGLVAGALFVLPGAVAIMVLSWIYAIFGNVGAVQAL 140 Query: 128 FYGIKPAVTAIVLQAAHRIGSRALKNNVLWAIAAVSFVAIFALNLPFPLIVAMAALIGYL 187 F+G+K AV AIVL+A RIG RAL+N + A+AA +F+A+F PFPL+V A LIG++ Sbjct: 141 FFGLKAAVLAIVLEAVLRIGRRALRNRAMIALAAGAFIALFLFRAPFPLVVLTAGLIGFV 200 Query: 188 GGKIAPSKFAVGGGHGASKKSFGKALIDDDT----PTPRHAL--FSWTGLLKIVLIGALL 241 GG+ + F G GHG K + + D +T P HA SW+ LK+ + L Sbjct: 201 GGRAGWAAFQAGNGHG---KVGSRQVADIETALGEEVPAHARPPISWS--LKVAGVALFL 255 Query: 242 WAIPMCGLTAIYGWEHTYAQMGWFFTKAALMTFGGAYAVLPYVYQGAVGHFSWLTPTQMI 301 W P+ L A+ G + + + FF+K A++TFGGAYAVL YV Q AV H+ WL P +M+ Sbjct: 256 WFAPVLALVALLGPGNVFTDISIFFSKMAMVTFGGAYAVLSYVAQQAVEHYHWLKPGEML 315 Query: 302 DGLALGETTPGPLIMVVAFVGFVGGYAKAVLGPDHLFLAGAMAASLVTWFTFLPSFLFIL 361 DGL + ETTPGPLIMV FVGF+G Y G H LAG + A L TW TF+P FL+I Sbjct: 316 DGLGMAETTPGPLIMVTQFVGFMGAYRDP--GLLHPLLAGTLGALLTTWVTFVPCFLWIF 373 Query: 362 AGGPLVEATHQDIKFTAPLTAITAAVVGVILNLATFFGFHVLWPKGWD-QGF-------- 412 G P +E + +A L AITAAVVGVILNLA +F HVL+ + ++ +GF Sbjct: 374 LGAPFMETMRNNRALSAALAAITAAVVGVILNLAVWFALHVLFRELYEARGFGMTVDVPV 433 Query: 413 ----DWISALIALAAVVALFRFKRNVIHVIVVCAVLGLI 447 + S ++ + A+VA+FRFK ++ V+ C+++GL+ Sbjct: 434 LSSVNLASLILTVGAIVAVFRFKIGMLTVLAGCSLIGLV 472 >mlr5407 [P] COG2059 Chromate transport protein ChrA Mlo Mesorhizobium loti Length = 463 Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust. Identities = 209/440 (47%), Positives = 281/440 (63%), Gaps = 29/440 (6%) Query: 11 NDDISPSVNFREAFLFWLKLGFISFGGPAGQISIMHQELVENRRWISERRFLHALNYCML 70 N + + F EA W K+G +SFGGPAGQI++MH+ELVE RRWI E+RFLHALNYCML Sbjct: 12 NVEAPAAPTFAEAVKVWAKIGLLSFGGPAGQIALMHRELVEERRWIGEQRFLHALNYCML 71 Query: 71 LPGPEAQQLATYIGWLMHRTFGGIVAGVLFVFPSLLILIILSWLYIAFGHLPVVEGLFYG 130 LPGPEAQQLA YIGWL+HRT GG+VAG+LFV P L+++ILS LY+ +G +P+VE LF G Sbjct: 72 LPGPEAQQLAIYIGWLLHRTIGGLVAGILFVVPGALVMLILSSLYMLYGDIPLVEALFLG 131 Query: 131 IKPAVTAIVLQAAHRIGSRALKNNVLWAIAAVSFVAIFALNLPFPLIVAMAALIGYLGGK 190 +K AV AIV++A RIG RALKN + +IA +F+AI+ALN+PFPLI+ +A L G+LG + Sbjct: 132 VKAAVLAIVIEAVIRIGRRALKNPAMVSIAVAAFIAIYALNVPFPLIILLAGLTGWLGDR 191 Query: 191 IAPSKFAVGGGHGASKKS---------FGKALIDDDTPTPRHALFSWTGLLKIVLIGALL 241 +AP F+ G HG F + + PT HA + V I + Sbjct: 192 LAPGLFS-GSAHGKDDGPDIKGAVDLMFERGELSHVKPTRWHA-------PRTVAIWLPI 243 Query: 242 WAIPMCGLTAIYGWEHTYAQMGWFFTKAALMTFGGAYAVLPYVYQGAVGHFSWLTPTQMI 301 W P+ + G + ++G FF+ A++TFGGAYAVL YV Q AV F WL P +M+ Sbjct: 244 WLGPVLLIWWFTGSASVWTEIGRFFSLMAVVTFGGAYAVLAYVAQAAVQSFGWLAPGEMV 303 Query: 302 DGLALGETTPGPLIMVVAFVGFVGGYAKAVLGPDHLFLAGAMAASLVTWFTFLPSFLFIL 361 DGL L ETTPGPLI+V+ FVGF+ + + G + L G++ A L W TF P F +I Sbjct: 304 DGLGLAETTPGPLILVLQFVGFIAAFRHS--GSLNPLLGGSLGALLTLWVTFTPCFFWIF 361 Query: 362 AGGPLVEATHQDIKFTAPLTAITAAVVGVILNLATFFGFHVLWPK------GWD----QG 411 G P +EA + +A L AITAAVVGVI+NLA +F HV++ + G + Sbjct: 362 LGAPYIEALRGNRALSAALGAITAAVVGVIMNLALWFALHVVFREVHAVSLGMNVPVLSS 421 Query: 412 FDWISALIALAAVVALFRFK 431 DW +AL++ AA++A+ + K Sbjct: 422 IDWRAALLSCAAMIAILKLK 441 >CC1097 [P] COG2059 Chromate transport protein ChrA Ccr Caulobacter vibrioides Length = 426 Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 164/394 (41%), Positives = 226/394 (57%), Gaps = 31/394 (7%) Query: 15 SPSVNFREAFLFWLKLGFISFGGPAGQISIMHQELVENRRWISERRFLHALNYCMLLPGP 74 PS +A WLK+G + FGGPAGQI+++H+E+VE RRWI + F AL++CMLLPGP Sbjct: 3 RPSPTLAQALPVWLKVGVLGFGGPAGQIALLHREVVEVRRWIDDAEFARALSFCMLLPGP 62 Query: 75 EAQQLATYIGWLMHRTFGGIVAGVLFVFPSLLILIILSWLYIAFGHLPVVEGLFYGIKPA 134 EAQQLAT++GW +H GG+ AG+LFV P L++++ LS LY+ G + G+K A Sbjct: 63 EAQQLATWLGWRLHGIRGGLAAGLLFVLPGLVVILGLSALYVVHGRSAWAGPVLLGLKAA 122 Query: 135 VTAIVLQAAHRIGSRALKNNVLWAIAAVSFVAIFALNLPFPLIVAMAALIG-YLGGKIAP 193 V A+V+QA RIG + LK+ A+AA +F + LPFPL+V A L+G +LGGK Sbjct: 123 VVALVVQALIRIGQKTLKDRAAIAVAAGAFALMAFTTLPFPLVVLAAGLVGWFLGGK--- 179 Query: 194 SKFAVGGGHGASKKSFGKALIDDDTPTPRHALFSWTGLLKIVLIGALLWAIPMCGLTAIY 253 + PTP + TG ++ L+ W P+ + I Sbjct: 180 ---------------------GEAAPTPVAP--ARTGGARVALVCLAAWLAPIALVWGIA 216 Query: 254 GWEHTYAQMGWFFTKAALMTFGGAYAVLPYVYQGAVGHFSWLTPTQMIDGLALGETTPGP 313 T A MG F A ++FGGAYA L Y+ Q A G F W++ +QM+DGL L ETTPGP Sbjct: 217 P-GSTLAWMGLTFGGLAAISFGGAYAALAYLGQAAAG-FGWVSASQMLDGLGLAETTPGP 274 Query: 314 LIMVVAFVGFVGGYAKAVLGPDHLFLAGAMAASLVTWFTFLPSFLFILAGGPLVEATHQD 373 L++V FVGFVG + A + +L + + W TF PSFL+I AGGPL E + Sbjct: 275 LVLVFVFVGFVGAFQAAP--AESAWLLAVLGGLMAAWATFAPSFLWIFAGGPLFERWGRR 332 Query: 374 IKFTAPLTAITAAVVGVILNLATFFGFHVLWPKG 407 + L ++AA VGVI LA +F H+L+ G Sbjct: 333 PRPARALAMVSAAAVGVIGQLALWFAIHLLFRSG 366 >MJ0718 [P] COG2059 Chromate transport protein ChrA Mja Methanococcus jannaschii Length = 402 Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/385 (22%), Positives = 179/385 (46%), Gaps = 49/385 (12%) Query: 24 FLFWLKLGFISFGGPAGQISIMHQELVENRRWISERRFLHALNYCMLLPGPEAQQLATYI 83 F+ +LKLG ++FGGP I+ + + +V+ ++W+ E+ F + + ++PG Q+A Y+ Sbjct: 27 FMSFLKLGMVAFGGPTA-IAYVREMVVDEKKWMDEKSFNNGVALAQIIPGASVMQVAAYV 85 Query: 84 GWLMHRTFGGIVAGVLFVFPSLLILIILSWLYIAFGHLPVVEGLFYGIKPAVTAIVLQAA 143 G+ + G A + + P+ LI++ L+ +Y+ LP +F ++ V ++ Sbjct: 86 GFYLRGIVGAFAAFMAYALPAFLIMLFLTIIYMHVKSLPKTVSIFEALRIIVVSLAANGT 145 Query: 144 HRIGSRALK---NNVLWAIAAVSFVAIFALNLPFPLIVAMAALIGYLGGKIAPSKFAVGG 200 + ++ + L I+A+ F+ F+ PF +++ ++ IG+L Sbjct: 146 LNFSKKNIRTIGDVFLLLISALLFILKFS---PF-IVIFVSIFIGFL------------- 188 Query: 201 GHGASKKSFGKALIDDDTPTPRHALFSWTGLLKIVLIGALLWAIPMCGLTAIYGWEHTYA 260 ++ K + D P + ++ + L L G L+ + +Y + Sbjct: 189 ---MYRRDITKLSLKIDIPREKLRIYKYVAYL---LFGVFLFNL------ILYMIDSKLF 236 Query: 261 QMGWFFTKAALMTFGGAYAVLPYVYQGAVGHFSWLTPTQMIDGLALGETTPGPLIMVVAF 320 + K + FGG Y +P++ V ++ + +DG+ALG+ TPGP+++ F Sbjct: 237 LLSTLMMKVDVFAFGGGYGSVPFMLHEVVDKYNLMDAKTFMDGIALGQITPGPIVITATF 296 Query: 321 VGF-VGGYAKAVLGPDHLFLAGAMAASLVTWFTFLPSFLFILAGGPLVEATHQDIKFTAP 379 VG+ VGG+ +++ S ++ FT PSF+ +L+ P+ ++ + F Sbjct: 297 VGYIVGGFIGSII-------------STISVFT--PSFIILLSSIPIFDSLKHNTIFKNI 341 Query: 380 LTAITAAVVGVILNLATFFGFHVLW 404 L I + VG+++ + F V W Sbjct: 342 LHMILVSFVGLLVAVTIRFALLVDW 366 >RSp0555 [P] COG2059 Chromate transport protein ChrA Rso Ralstonia solanacearum Length = 401 Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 7/159 (4%) Query: 8 SPANDDISPSVNFREAFLFWL------KLGFISFGGPAGQISIMHQELVENRRWISERRF 61 PA+ SP R + W +LG + FGGP M ++LVE R+WISE + Sbjct: 5 QPADTTTSPPSRERPRYTLWQLVRYFARLGSLGFGGPVALAGYMRRDLVEARQWISEADY 64 Query: 62 LHALNYCMLLPGPEAQQLATYIGWLMHRTFGGIVAGVLFVFPSLLILIILSWLYIAFGHL 121 L L PGP A QLA Y+G++ +R G + G+ FV PS +++ L W Y+ FG L Sbjct: 65 KEGLALAQLAPGPLAAQLAIYLGYVHYRILGATLVGIAFVLPSFWMVVALGWAYVRFGGL 124 Query: 122 PVVEGLFYGIKPAVTAIVLQAAHRIGSRAL-KNNVLWAI 159 ++ +FYG+ AV I+ +A+++ ++++ K+ +LW + Sbjct: 125 TWMQSVFYGVGAAVIGIIAISAYKLTAKSVGKDKLLWLV 163 Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 14/131 (10%) Query: 261 QMGWFFTKAALMTFGGAYAVLPYVYQGAVGHFSWLTPTQMIDGLALGETTPGPLIMVVAF 320 Q+G FF KA FG A++P++Y G V F WL Q +D +A+ TPGP+++ V F Sbjct: 229 QIGVFFAKAGAFVFGSGLAIVPFLYGGVVTEFHWLNDKQFVDAVAVAMITPGPVVITVGF 288 Query: 321 VGFVGGYAKAVLGPDHLFLAGAMAASLVTWFTFLPSFLFILAGGPLVEATHQDIKFTAPL 380 +G++ +AG A + TFLP +LF + P + A + Sbjct: 289 IGYL--------------VAGLPGACVAAVGTFLPCYLFTILPAPYFRKYGKLPAILAFV 334 Query: 381 TAITAAVVGVI 391 +TAA VG I Sbjct: 335 DGVTAAAVGAI 345