BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0007.p (308 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2209 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 252 8e-67 ZyeeY [K] COG0583 Transcriptional regulator EcZ Escherichia coli... 207 2e-53 ECs2817 [K] COG0583 Transcriptional regulator Ecs Escherichia co... 207 2e-53 yeeY [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 205 1e-52 STM2069 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 203 5e-52 >RSc2209 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 300 Score = 252 bits (643), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 133/299 (44%), Positives = 186/299 (62%), Gaps = 1/299 (0%) Query: 4 ISLDALLILDAIDRRGSFSAAGLELHRVPSTISYTVSKLEQDLGVQVFDRQGPKVVLTRA 63 +SL++L +LDAI+R+GSF+AA EL +VPS ++Y V KLE DL V +FDR+ + LT A Sbjct: 3 LSLESLEVLDAIERKGSFAAAAHELGKVPSALTYVVRKLEDDLDVLLFDRRRHRAELTPA 62 Query: 64 GEELLKEGRYLLKAAEDLEHRVRRVASGWETEFTIGLDSLYSAASLESDIVAFYQVADRT 123 G LL EGR+LL+AA++L RV+R+A+GWE TI +D L +L I FY T Sbjct: 63 GRALLDEGRHLLQAADELARRVKRLATGWEATLTIVMDDLVHFRALMPVIQDFYAENTAT 122 Query: 124 RLRIARESLAGTWEALLDRRVDLLIAAPGEGPAGGGYVAEQIGTVKFVFVVAPHHPLAKM 183 RLR RE LAG+W+ALL R DLLI P G +G + FVF VA HHPLA++ Sbjct: 123 RLRFCREVLAGSWDALLSGRADLLIGPAHIAPV-QGVQTRPLGEIPFVFAVAAHHPLAQL 181 Query: 184 DKVLSKADLHPYRAISVADSARKMPPRTVGLLFGQDTLTVPDMRSKYALQLAGVGFGFLP 243 ++ L + + +R ++V D++R +PPRTVG++ GQDTL VP M K Q+ G+G G+LP Sbjct: 182 EEPLPASAIARHRIVAVGDTSRNLPPRTVGIMAGQDTLVVPAMADKVQAQIRGLGCGWLP 241 Query: 244 EPCVRKSIASGALVVKEVEQPRAEETFSLAWRVGEDGAALTWWLKRMRETDILNRMLSQ 302 P + + SG LV K + R F +AWR G AL WW+ ++ + + +L Q Sbjct: 242 RPLAQPYLDSGVLVAKATVEDRRAGNFQIAWRTNMRGKALQWWVDKLEDPRLAQALLMQ 300 >ZyeeY [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 316 Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/281 (38%), Positives = 167/281 (59%) Query: 6 LDALLILDAIDRRGSFSAAGLELHRVPSTISYTVSKLEQDLGVQVFDRQGPKVVLTRAGE 65 LD L+ILDA+++ GSF+AA +L++ PS +SYTV KLE DL +Q+ DR G + TR G+ Sbjct: 12 LDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFTRTGK 71 Query: 66 ELLKEGRYLLKAAEDLEHRVRRVASGWETEFTIGLDSLYSAASLESDIVAFYQVADRTRL 125 LL++GR +L +LE + ++ GWE E IG+D + + L I AFYQ + TRL Sbjct: 72 MLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHNVTRL 131 Query: 126 RIARESLAGTWEALLDRRVDLLIAAPGEGPAGGGYVAEQIGTVKFVFVVAPHHPLAKMDK 185 + L G+W+AL R D+++ A E P+ + ++G ++ VF VAPHHPLA+ ++ Sbjct: 132 KFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFGFSRLGDLEQVFAVAPHHPLAQEEE 191 Query: 186 VLSKADLHPYRAISVADSARKMPPRTVGLLFGQDTLTVPDMRSKYALQLAGVGFGFLPEP 245 L++ + YRAI V D+A+ LL Q+ +TV D ++K LQ++G+G G+LP Sbjct: 192 PLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPRY 251 Query: 246 CVRKSIASGALVVKEVEQPRAEETFSLAWRVGEDGAALTWW 286 ++ + SGAL+ K+V E + W G A WW Sbjct: 252 LAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWW 292 >ECs2817 [K] COG0583 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 316 Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/281 (38%), Positives = 167/281 (59%) Query: 6 LDALLILDAIDRRGSFSAAGLELHRVPSTISYTVSKLEQDLGVQVFDRQGPKVVLTRAGE 65 LD L+ILDA+++ GSF+AA +L++ PS +SYTV KLE DL +Q+ DR G + TR G+ Sbjct: 12 LDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFTRTGK 71 Query: 66 ELLKEGRYLLKAAEDLEHRVRRVASGWETEFTIGLDSLYSAASLESDIVAFYQVADRTRL 125 LL++GR +L +LE + ++ GWE E IG+D + + L I AFYQ + TRL Sbjct: 72 MLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHNVTRL 131 Query: 126 RIARESLAGTWEALLDRRVDLLIAAPGEGPAGGGYVAEQIGTVKFVFVVAPHHPLAKMDK 185 + L G+W+AL R D+++ A E P+ + ++G ++ VF VAPHHPLA+ ++ Sbjct: 132 KFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFGFSRLGDLEQVFAVAPHHPLAQEEE 191 Query: 186 VLSKADLHPYRAISVADSARKMPPRTVGLLFGQDTLTVPDMRSKYALQLAGVGFGFLPEP 245 L++ + YRAI V D+A+ LL Q+ +TV D ++K LQ++G+G G+LP Sbjct: 192 PLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPRY 251 Query: 246 CVRKSIASGALVVKEVEQPRAEETFSLAWRVGEDGAALTWW 286 ++ + SGAL+ K+V E + W G A WW Sbjct: 252 LAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWW 292 >yeeY [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 316 Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 109/281 (38%), Positives = 165/281 (58%) Query: 6 LDALLILDAIDRRGSFSAAGLELHRVPSTISYTVSKLEQDLGVQVFDRQGPKVVLTRAGE 65 LD L+ILDA+++ GSF+AA +L++ PS +SYTV KLE DL +Q+ DR G + TR G+ Sbjct: 12 LDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFTRTGK 71 Query: 66 ELLKEGRYLLKAAEDLEHRVRRVASGWETEFTIGLDSLYSAASLESDIVAFYQVADRTRL 125 LL++GR +L +LE + ++ GWE E IG+D + + L I AFYQ TRL Sbjct: 72 MLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHSVTRL 131 Query: 126 RIARESLAGTWEALLDRRVDLLIAAPGEGPAGGGYVAEQIGTVKFVFVVAPHHPLAKMDK 185 + L G+W+AL R D+++ A E P+ + ++G ++ VF VAPHHPLA ++ Sbjct: 132 KFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFGFSRLGDLEQVFAVAPHHPLALEEE 191 Query: 186 VLSKADLHPYRAISVADSARKMPPRTVGLLFGQDTLTVPDMRSKYALQLAGVGFGFLPEP 245 L++ + YRAI V D+A+ LL Q+ +TV D ++K LQ++G+G G+LP Sbjct: 192 PLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPRY 251 Query: 246 CVRKSIASGALVVKEVEQPRAEETFSLAWRVGEDGAALTWW 286 ++ + SGAL+ K+V E + W G A WW Sbjct: 252 LAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWW 292 >STM2069 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 304 Score = 203 bits (516), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 110/283 (38%), Positives = 163/283 (57%), Gaps = 4/283 (1%) Query: 6 LDALLILDAIDRRGSFSAAGLELHRVPSTISYTVSKLEQDLGVQVFDRQGPKVVLTRAGE 65 LD L+ILDA+++ GSF+AA +L + PS +SYTV KLE DL +Q+ DR G + TR G+ Sbjct: 5 LDVLIILDALEKEGSFAAASAKLFKTPSALSYTVHKLENDLNIQLLDRSGHRARFTRTGK 64 Query: 66 ELLKEGRYLLKAAEDLEHRVRRVASGWETEFTIGLDSLYSAASLESDIVAFYQVADRTRL 125 LL++GR +L +LE + ++ GWE E IG+D + + L I AFYQ TRL Sbjct: 65 MLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIDAFYQRHSVTRL 124 Query: 126 RIARESLAGTWEALLDRRVDLLIAAPGEGPAGGGYVAEQIGTVKFVFVVAPHHPLAKMDK 185 + L G+WE L R D+++ A P G+ ++G ++ VF VAPHHPL ++ Sbjct: 125 KFVNGVLGGSWETLTQGRADIIVGAMRAPPPDTGFGFARLGDLELVFAVAPHHPLVHEEE 184 Query: 186 VLSKADLHPYRAISVADSARKMPPRTVG--LLFGQDTLTVPDMRSKYALQLAGVGFGFLP 243 LS+ + +RAI V DS R++G LL Q+ +TV D ++K LQ++G+G G+LP Sbjct: 185 PLSRQTIKRFRAIVVGDSVHS--SRSIGSELLDAQEAITVFDFKTKLELQISGLGCGYLP 242 Query: 244 EPCVRKSIASGALVVKEVEQPRAEETFSLAWRVGEDGAALTWW 286 ++ + SGAL+ K+V E + W G A WW Sbjct: 243 RYLAQRFLESGALIEKKVVAQIVYEPVWVGWNEQTAGLASGWW 285