BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0115.p (206 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM3560 [E] COG0410 ABC-type branched-chain amino acid transport... 286 2e-77 ZlivF [E] COG0410 ABC-type branched-chain amino acid transport s... 285 4e-77 ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport... 285 4e-77 livF [E] COG0410 ABC-type branched-chain amino acid transport sy... 285 4e-77 YPO3804 [E] COG0410 ABC-type branched-chain amino acid transport... 273 2e-73 >STM3560 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sty Salmonella typhimurium LT2 Length = 237 Score = 286 bits (733), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 141/204 (69%), Positives = 169/204 (82%), Gaps = 1/204 (0%) Query: 2 LMTLCG-KPAGKTTLLMTLCGKPRASSGKIIFEGQDITQRSTHEIMRLGMAISPEGRRVF 60 ++TL G AGKTTLL TLCG PRASSG+++F+G+DIT T +IMR +AI PEGRRVF Sbjct: 33 IVTLIGANGAGKTTLLGTLCGDPRASSGRVVFDGKDITDWQTAKIMREAVAIVPEGRRVF 92 Query: 61 PSLTVLENLKMGAFFATNDQVEEGVQHVFGLFPRLKERAGQRAGTMSGGEQQMLAIGRAL 120 +TV ENL MG FFA D+ +E ++ V+ LFPRL ER QRAGTMSGGEQQMLAIGRAL Sbjct: 93 SRMTVEENLAMGGFFAERDRFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRAL 152 Query: 121 MSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIRDQGVTVFLVEQNANKALGVADRGYVLEN 180 MS+PRLLLLDEP+LGLAP++I QIF+ I +R+QG+T+FLVEQNAN+AL +ADRGYVLEN Sbjct: 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLEN 212 Query: 181 GHVVLADTGANLLANDAVRKAYLG 204 GHVVL+DTG LLAN+AVR AYLG Sbjct: 213 GHVVLSDTGDALLANEAVRSAYLG 236 >ZlivF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component EcZ Escherichia coli O157:H7 EDL933 Length = 241 Score = 285 bits (730), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 141/204 (69%), Positives = 167/204 (81%), Gaps = 1/204 (0%) Query: 2 LMTLCG-KPAGKTTLLMTLCGKPRASSGKIIFEGQDITQRSTHEIMRLGMAISPEGRRVF 60 ++TL G AGKTTLL TLCG PRA+SG+I+F+ +DIT T +IMR +AI PEGRRVF Sbjct: 37 IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVF 96 Query: 61 PSLTVLENLKMGAFFATNDQVEEGVQHVFGLFPRLKERAGQRAGTMSGGEQQMLAIGRAL 120 +TV ENL MG FFA DQ +E ++ V+ LFPRL ER QRAGTMSGGEQQMLAIGRAL Sbjct: 97 SRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRAL 156 Query: 121 MSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIRDQGVTVFLVEQNANKALGVADRGYVLEN 180 MS PRLLLLDEP+LGLAP++I QIF+ I +R+QG+T+FLVEQNAN+AL +ADRGYVLEN Sbjct: 157 MSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLEN 216 Query: 181 GHVVLADTGANLLANDAVRKAYLG 204 GHVVL+DTG LLAN+AVR AYLG Sbjct: 217 GHVVLSDTGDALLANEAVRSAYLG 240 >ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ecs Escherichia coli O157:H7 Length = 241 Score = 285 bits (730), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 141/204 (69%), Positives = 167/204 (81%), Gaps = 1/204 (0%) Query: 2 LMTLCG-KPAGKTTLLMTLCGKPRASSGKIIFEGQDITQRSTHEIMRLGMAISPEGRRVF 60 ++TL G AGKTTLL TLCG PRA+SG+I+F+ +DIT T +IMR +AI PEGRRVF Sbjct: 37 IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVF 96 Query: 61 PSLTVLENLKMGAFFATNDQVEEGVQHVFGLFPRLKERAGQRAGTMSGGEQQMLAIGRAL 120 +TV ENL MG FFA DQ +E ++ V+ LFPRL ER QRAGTMSGGEQQMLAIGRAL Sbjct: 97 SRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRAL 156 Query: 121 MSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIRDQGVTVFLVEQNANKALGVADRGYVLEN 180 MS PRLLLLDEP+LGLAP++I QIF+ I +R+QG+T+FLVEQNAN+AL +ADRGYVLEN Sbjct: 157 MSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLEN 216 Query: 181 GHVVLADTGANLLANDAVRKAYLG 204 GHVVL+DTG LLAN+AVR AYLG Sbjct: 217 GHVVLSDTGDALLANEAVRSAYLG 240 >livF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Eco Escherichia coli K12 Length = 241 Score = 285 bits (730), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 141/204 (69%), Positives = 167/204 (81%), Gaps = 1/204 (0%) Query: 2 LMTLCG-KPAGKTTLLMTLCGKPRASSGKIIFEGQDITQRSTHEIMRLGMAISPEGRRVF 60 ++TL G AGKTTLL TLCG PRA+SG+I+F+ +DIT T +IMR +AI PEGRRVF Sbjct: 37 IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVF 96 Query: 61 PSLTVLENLKMGAFFATNDQVEEGVQHVFGLFPRLKERAGQRAGTMSGGEQQMLAIGRAL 120 +TV ENL MG FFA DQ +E ++ V+ LFPRL ER QRAGTMSGGEQQMLAIGRAL Sbjct: 97 SRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRAL 156 Query: 121 MSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIRDQGVTVFLVEQNANKALGVADRGYVLEN 180 MS PRLLLLDEP+LGLAP++I QIF+ I +R+QG+T+FLVEQNAN+AL +ADRGYVLEN Sbjct: 157 MSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLEN 216 Query: 181 GHVVLADTGANLLANDAVRKAYLG 204 GHVVL+DTG LLAN+AVR AYLG Sbjct: 217 GHVVLSDTGDALLANEAVRSAYLG 240 >YPO3804 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ype Yersinia pestis Length = 233 Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 136/204 (66%), Positives = 164/204 (80%), Gaps = 1/204 (0%) Query: 2 LMTLCG-KPAGKTTLLMTLCGKPRASSGKIIFEGQDITQRSTHEIMRLGMAISPEGRRVF 60 ++TL G AGKTTLL TLCG+PRA+ G I+F QDIT T IMR +AI PEGRRVF Sbjct: 29 IVTLIGANGAGKTTLLGTLCGEPRATEGNIVFGEQDITHWQTARIMREAIAIVPEGRRVF 88 Query: 61 PSLTVLENLKMGAFFATNDQVEEGVQHVFGLFPRLKERAGQRAGTMSGGEQQMLAIGRAL 120 +TV ENL MG FFA Q ++ ++ V+ LFPRL ER QRAGTMSGGEQQMLAIGRAL Sbjct: 89 SRMTVEENLAMGGFFADRQQYQQRIERVYDLFPRLFERRIQRAGTMSGGEQQMLAIGRAL 148 Query: 121 MSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIRDQGVTVFLVEQNANKALGVADRGYVLEN 180 MS+P+LLLLDEP+LGLAP++I QIF+ I+ +R++G+T+FLVEQNAN+AL +ADRGYVLEN Sbjct: 149 MSQPKLLLLDEPSLGLAPIIILQIFDTIQQLREEGMTIFLVEQNANQALKLADRGYVLEN 208 Query: 181 GHVVLADTGANLLANDAVRKAYLG 204 G +VL DTGA LLAN+AVR AYLG Sbjct: 209 GRIVLEDTGAALLANEAVRSAYLG 232