BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0113.p (408 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3806 [E] COG4177 ABC-type branched-chain amino acid transport... 474 e-133 PA1072 [E] COG4177 ABC-type branched-chain amino acid transport ... 453 e-127 STM3562 [E] COG4177 ABC-type branched-chain amino acid transport... 445 e-124 livM [E] COG4177 ABC-type branched-chain amino acid transport sy... 439 e-123 ZlivM [E] COG4177 ABC-type branched-chain amino acid transport s... 438 e-123 >YPO3806 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ype Yersinia pestis Length = 428 Score = 474 bits (1219), Expect = e-133, Method: Compositional matrix adjust. Identities = 243/408 (59%), Positives = 303/408 (74%), Gaps = 8/408 (1%) Query: 7 NAVAAAILTAILTTPMLGLQLQLEGYRVVLNA----HWTPVLIAVLVVFVFQLIKPALTR 62 NA+ ++ + +L + ++GLQLQL+G R+V+ W + LVVF FQL++P + + Sbjct: 8 NAIISSFVLLVLASFVMGLQLQLDGTRLVVQGASEVRWLWIGAGCLVVFCFQLVRPLIQQ 67 Query: 63 STRKIRLPA--LPQLQPRQQRYALLFLFAIALV--WPFFGSRGNVDVVTLALIYVILGLG 118 +K+ PA LP R LL I WPF SRG+VD+ TL LIYV+LGLG Sbjct: 68 GIKKVSGPAWVLPSFDGTTPRQKLLAAVVIIAAVAWPFLVSRGSVDIATLTLIYVMLGLG 127 Query: 119 LNIVVGFAGLLDLGYVGFYAVGGYTYALLNQYFGFTFWECLPIAAGMSALFGFILGFPVL 178 LN+VVG +GLL LGY GFYA+G YTYALLN Y+G FWE LP+A +AL GF+LGFPVL Sbjct: 128 LNVVVGLSGLLVLGYGGFYAIGAYTYALLNHYYGLGFWESLPLAGITAALSGFLLGFPVL 187 Query: 179 RLRGDYLAIVTLGFGEIIRLLLNNMTSLTGGPDGVSGIPKPTVFGIEMARNASVEGGTTF 238 RLRGDYLAIVTLGFGEI+R+LL N T +TGGP+G+S IPKPT+FG+E +R A G TF Sbjct: 188 RLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAKDGGWDTF 247 Query: 239 HDMLGLTYQGGHMVIFLYFVALLLVLFTYFVTSRLIRMPMGRAWEALRDDEIACRSLGIN 298 H+ GLTY H +IFLY VALLLV+ T FV +RL+RMP+GRAWEALR+DEIACRSLG++ Sbjct: 248 HNFFGLTYDPSHRIIFLYLVALLLVILTLFVINRLLRMPLGRAWEALREDEIACRSLGLS 307 Query: 299 PTRIKLSAFTLGAAFAGLAGSFFAARQGLVNPESFTFIESALILAIVVLGGMGSQLGVIL 358 PT+IKL+AFT+ AAFAG AG+ FAARQG V+PESFTF+ESA +LAIVVLGGMGSQ VIL Sbjct: 308 PTKIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFVESAFVLAIVVLGGMGSQFAVIL 367 Query: 359 AAILLTILPEVARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVEL 406 AA+LL + E+ R Y ML+ G +MVLMM+WRPQGLLP RP ++L Sbjct: 368 AAVLLVVSRELMRDLNAYSMLLLGALMVLMMIWRPQGLLPMKRPQLKL 415 >PA1072 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Pae Pseudomonas aeruginosa Length = 417 Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust. Identities = 264/418 (63%), Positives = 319/418 (76%), Gaps = 15/418 (3%) Query: 1 MPITLKNAVAAAILTAILTTPMLGLQLQLEGYRV-VLNAH----WTPVLIAVLVVFVFQL 55 M +LK A+ +A+L +++ P+LGL+L+ G ++ VL A WT + A L +FV+QL Sbjct: 1 MSQSLKRALFSALLVILVSYPILGLKLRTVGIKLEVLGADAQTLWT-IAAAALAMFVWQL 59 Query: 56 IKP----ALTRST-RKIRLPALPQLQ--PRQQRYALLFLFAIALVWPFFGSRGNVDVVTL 108 + L R K+ L P QR+A+L L +A VWPFF SRG VD+ TL Sbjct: 60 FRDRIPLKLGRGVGYKVNGSGLKNFLSLPSTQRWAVLALVVVAFVWPFFASRGAVDIATL 119 Query: 109 ALIYVILGLGLNIVVGFAGLLDLGYVGFYAVGGYTYALLNQYFGFTFWECLPIAAGMSAL 168 LIYV+LG+GLNIVVG AGLLDLGYVGFYAVG YTYALL +Y GF FW LPIA M+AL Sbjct: 120 ILIYVMLGIGLNIVVGLAGLLDLGYVGFYAVGAYTYALLAEYAGFGFWTALPIAGMMAAL 179 Query: 169 FGFILGFPVLRLRGDYLAIVTLGFGEIIRLLLNNMTSLTGGPDGVSGIPKPTVFGIEMAR 228 FGF+LGFPVLRLRGDYLAIVTLGFGEIIR+LL NMT +TGGP+G+ IPKPT+FG+ R Sbjct: 180 FGFLLGFPVLRLRGDYLAIVTLGFGEIIRILLRNMTEITGGPNGIGSIPKPTLFGLTFER 239 Query: 229 NASVEGGTTFHDMLGLTYQGGHMVIFLYFVALLLVLFTYFVTSRLIRMPMGRAWEALRDD 288 A EG TFH+ G+ Y + VI LY VALLLVL FV +RL+RMP+GRAWEALR+D Sbjct: 240 RAP-EGMQTFHEFFGIAYNTNYKVILLYVVALLLVLLALFVINRLMRMPIGRAWEALRED 298 Query: 289 EIACRSLGINPTRIKLSAFTLGAAFAGLAGSFFAARQGLVNPESFTFIESALILAIVVLG 348 E+ACR+LG+NPT +KLSAFT+GA+FAG AGSFFAARQGLV PESFTFIESA+ILAIVVLG Sbjct: 299 EVACRALGLNPTIVKLSAFTIGASFAGFAGSFFAARQGLVTPESFTFIESAMILAIVVLG 358 Query: 349 GMGSQLGVILAAILLTILPEVARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVEL 406 GMGSQLGVILAA+++ +L E+ R F EYRMLIFGL M++MM+WRPQGLLP RPH+EL Sbjct: 359 GMGSQLGVILAAVVMVLLQEM-RGFNEYRMLIFGLTMIVMMIWRPQGLLPMQRPHLEL 415 >STM3562 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Sty Salmonella typhimurium LT2 Length = 425 Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust. Identities = 236/413 (57%), Positives = 307/413 (74%), Gaps = 8/413 (1%) Query: 2 PITLKNAVAAAILTAILTTPMLGLQLQLEGYRVVLNA----HWTPVLIAVLVVFVFQLIK 57 P+ + A+ +A + +L +G+QL+L+G ++V++ W + I VVF FQL++ Sbjct: 3 PMHIAMALFSAAMFFVLAGVFMGVQLELDGTKLVVDTAADIRWQWIFIGTAVVFFFQLLR 62 Query: 58 PALTRSTRKIRLPA--LPQLQPR--QQRYALLFLFAIALVWPFFGSRGNVDVVTLALIYV 113 P ++ + + P LP + +Q+ L+ L IA+ WPF SRG+VD+ T+ +IY+ Sbjct: 63 PMFQKAVKHVSGPKFILPAIDGSTVKQKLFLMALLVIAVAWPFMVSRGSVDIATMTMIYI 122 Query: 114 ILGLGLNIVVGFAGLLDLGYVGFYAVGGYTYALLNQYFGFTFWECLPIAAGMSALFGFIL 173 ILGLGLN+VVG +GLL LGY GFYA+G YT+ALLN Y+G FW CLP+A +SA GF+L Sbjct: 123 ILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPLAGLVSAAAGFLL 182 Query: 174 GFPVLRLRGDYLAIVTLGFGEIIRLLLNNMTSLTGGPDGVSGIPKPTVFGIEMARNASVE 233 GFPVLRLRGDYLAIVTLGFGEI+R+LL N T +TGGP+G+S IPKPT+FG+E +R+ Sbjct: 183 GFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRSTREG 242 Query: 234 GGTTFHDMLGLTYQGGHMVIFLYFVALLLVLFTYFVTSRLIRMPMGRAWEALRDDEIACR 293 G TF + G+ Y VIFLY VALLLV+ + FV +RL+RMP+GRAWEALR+DEIACR Sbjct: 243 GWDTFSNFFGVKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACR 302 Query: 294 SLGINPTRIKLSAFTLGAAFAGLAGSFFAARQGLVNPESFTFIESALILAIVVLGGMGSQ 353 SLG++PTRIKL+AFT+ AAFAG AG+ FAARQG V+PESFTF ESA +LAIVVLGGMGSQ Sbjct: 303 SLGLSPTRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQ 362 Query: 354 LGVILAAILLTILPEVARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVEL 406 VILAA+LL + E+ R F EY ML+ G +MVLMM+WRPQGLLP TRP ++L Sbjct: 363 FAVILAAVLLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKL 415 >livM [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Eco Escherichia coli K12 Length = 425 Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust. Identities = 241/415 (58%), Positives = 305/415 (73%), Gaps = 8/415 (1%) Query: 2 PITLKNAVAAAILTAILTTPMLGLQLQLEGYRVVLNA----HWTPVLIAVLVVFVFQLIK 57 P+ + A+ +A + +L +G+QL+L+G ++V++ W V I VVF FQL++ Sbjct: 3 PMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQLLR 62 Query: 58 PALTRSTRKIRLPA--LPQLQPR--QQRYALLFLFAIALVWPFFGSRGNVDVVTLALIYV 113 PA + + + P LP + +Q+ L+ L +A+ WPF SRG VD+ TL +IY+ Sbjct: 63 PAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYI 122 Query: 114 ILGLGLNIVVGFAGLLDLGYVGFYAVGGYTYALLNQYFGFTFWECLPIAAGMSALFGFIL 173 ILGLGLN+VVG +GLL LGY GFYA+G YT+ALLN Y+G FW CLPIA M+A GF+L Sbjct: 123 ILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLL 182 Query: 174 GFPVLRLRGDYLAIVTLGFGEIIRLLLNNMTSLTGGPDGVSGIPKPTVFGIEMARNASVE 233 GFPVLRLRGDYLAIVTLGFGEI+R+LL N T +TGGP+G+S IPKPT+FG+E +R A Sbjct: 183 GFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAREG 242 Query: 234 GGTTFHDMLGLTYQGGHMVIFLYFVALLLVLFTYFVTSRLIRMPMGRAWEALRDDEIACR 293 G TF + GL Y VIFLY VALLLV+ + FV +RL+RMP+GRAWEALR+DEIACR Sbjct: 243 GWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACR 302 Query: 294 SLGINPTRIKLSAFTLGAAFAGLAGSFFAARQGLVNPESFTFIESALILAIVVLGGMGSQ 353 SLG++P RIKL+AFT+ AAFAG AG+ FAARQG V+PESFTF ESA +LAIVVLGGMGSQ Sbjct: 303 SLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQ 362 Query: 354 LGVILAAILLTILPEVARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPR 408 VILAAILL + E+ R F EY ML+ G +MVLMM+WRPQGLLP TRP ++L Sbjct: 363 FAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKN 417 >ZlivM [E] COG4177 ABC-type branched-chain amino acid transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 425 Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust. Identities = 241/415 (58%), Positives = 304/415 (73%), Gaps = 8/415 (1%) Query: 2 PITLKNAVAAAILTAILTTPMLGLQLQLEGYRVVLNA----HWTPVLIAVLVVFVFQLIK 57 P+ + A+ +A + +L +G+QL+L+G ++V++ W V I VVF FQL++ Sbjct: 3 PMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDIRWQWVFIGTAVVFFFQLLR 62 Query: 58 PALTRSTRKIRLPA--LPQLQPR--QQRYALLFLFAIALVWPFFGSRGNVDVVTLALIYV 113 PA + + + P LP + +Q+ L+ L +A+ WPF SRG VD+ TL +IY+ Sbjct: 63 PAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYI 122 Query: 114 ILGLGLNIVVGFAGLLDLGYVGFYAVGGYTYALLNQYFGFTFWECLPIAAGMSALFGFIL 173 ILGLGLN+VVG +GLL LGY GFYA+G YT+ALLN Y+G FW CLPIA M+A GF+L Sbjct: 123 ILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLL 182 Query: 174 GFPVLRLRGDYLAIVTLGFGEIIRLLLNNMTSLTGGPDGVSGIPKPTVFGIEMARNASVE 233 GFPVLRLRGDYLAIVTLGFGEI+R+LL N T +TGGP+G+S IPKPT FG+E +R A Sbjct: 183 GFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTFFGLEFSRTAREG 242 Query: 234 GGTTFHDMLGLTYQGGHMVIFLYFVALLLVLFTYFVTSRLIRMPMGRAWEALRDDEIACR 293 G TF + GL Y VIFLY VALLLV+ + FV +RL+RMP+GRAWEALR+DEIACR Sbjct: 243 GWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACR 302 Query: 294 SLGINPTRIKLSAFTLGAAFAGLAGSFFAARQGLVNPESFTFIESALILAIVVLGGMGSQ 353 SLG++P RIKL+AFT+ AAFAG AG+ FAARQG V+PESFTF ESA +LAIVVLGGMGSQ Sbjct: 303 SLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQ 362 Query: 354 LGVILAAILLTILPEVARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPR 408 VILAAILL + E+ R F EY ML+ G +MVLMM+WRPQGLLP TRP ++L Sbjct: 363 FAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKN 417