BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0111.p (380 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1074 [E] COG0683 ABC-type branched-chain amino acid transport ... 465 e-131 livK [E] COG0683 ABC-type branched-chain amino acid transport sy... 397 e-110 ZlivK [E] COG0683 ABC-type branched-chain amino acid transport s... 396 e-110 ECs4305 [E] COG0683 ABC-type branched-chain amino acid transport... 396 e-110 ZlivJ [E] COG0683 ABC-type branched-chain amino acid transport s... 394 e-109 >PA1074 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Pae Pseudomonas aeruginosa Length = 373 Score = 465 bits (1196), Expect = e-131, Method: Compositional matrix adjust. Identities = 226/373 (60%), Positives = 286/373 (76%), Gaps = 6/373 (1%) Query: 9 RRLTKVAMAVGVAVSAISFAGIAQA-ETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQIN 67 +RL+++ A+ +A FA + A +T+KIA+AGP+TG VAQYGDM +AGAL AIEQIN Sbjct: 6 QRLSRLFAAMAIA----GFASYSMAADTIKIALAGPVTGPVAQYGDMQRAGALMAIEQIN 61 Query: 68 AAGGAGGNKFEAVLMDDACEPKQAVAVANKIVSQGIKFVIGHVCSGSTIPASDIYENEGV 127 AGG G + E V+ DDAC+PKQAVAVANK+V+ G+KFV+GHVCS ST PA+DIYE+EGV Sbjct: 62 KAGGVNGAQLEGVIYDDACDPKQAVAVANKVVNDGVKFVVGHVCSSSTQPATDIYEDEGV 121 Query: 128 VMITPSATAPQLTEAKPHKYIFRTIGRDDQQGPAAAKYVVEKLKPKKAAVLHDKQSYGQG 187 +MITPSATAP++T ++ +K IFRTIG D+ QGP A K++ E+ K K AVLHDKQ YG+G Sbjct: 122 LMITPSATAPEIT-SRGYKLIFRTIGLDNMQGPVAGKFIAERYKDKTIAVLHDKQQYGEG 180 Query: 188 VATSVKAGLDAAKIPVVVFEGVNAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLIMRQA 247 +AT VK ++ A I V VFEG+NAGD D++A+I+KLK GV FVYFGGYHPEMGL++RQA Sbjct: 181 IATEVKKTVEDAGIKVAVFEGLNAGDKDFNALISKLKKAGVQFVYFGGYHPEMGLLLRQA 240 Query: 248 REQGVKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAQKRDPN 307 ++ G+ A FMGPEGVGN +ITAIAG ASEGML TLP F DP N AL+ AF A+ +DP+ Sbjct: 241 KQAGLDARFMGPEGVGNSEITAIAGDASEGMLATLPRAFEQDPKNKALIDAFKAKNQDPS 300 Query: 308 GPFQMPAYSGVKVIADAITATKSTDPTKVAAYIHANSFKTPIGTVEYDKKGDLKSFKFVV 367 G F +PAYS V VIA I DP KVA + AN+F+TP G + +D+KGDLK+F F V Sbjct: 301 GIFVLPAYSAVTVIAKGIEKAGEADPEKVAEALRANTFETPTGNLGFDEKGDLKNFDFTV 360 Query: 368 FTWHKDATKTEAK 380 + WHKDAT+TE K Sbjct: 361 YEWHKDATRTEVK 373 >livK [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Eco Escherichia coli K12 Length = 369 Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/357 (52%), Positives = 257/357 (71%), Gaps = 1/357 (0%) Query: 24 AISFAGIAQAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAGGAGGNKFEAVLMD 83 A++ + A A+ +K+A+ G M+G +AQ+GDM GA AI+ INA GG G+K V D Sbjct: 14 ALAISHTAMADDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYD 73 Query: 84 DACEPKQAVAVANKIVSQGIKFVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAK 143 DAC+PKQAVAVANKIV+ GIK+VIGH+CS ST PASDIYE+EG++MI+P AT P+LT+ + Sbjct: 74 DACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQ-R 132 Query: 144 PHKYIFRTIGRDDQQGPAAAKYVVEKLKPKKAAVLHDKQSYGQGVATSVKAGLDAAKIPV 203 +++I RT G D QGP AAKY++E +KP++ A++HDKQ YG+G+A SV+ GL AA V Sbjct: 133 GYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANV 192 Query: 204 VVFEGVNAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLIMRQAREQGVKAVFMGPEGVG 263 V F+G+ AG+ D+SA+I +LK + +DFVY+GGY+PEMG ++RQAR G+K FMGPEGVG Sbjct: 193 VFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVG 252 Query: 264 NKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAQKRDPNGPFQMPAYSGVKVIAD 323 N ++ IAG A+EGMLVT+P + DPAN +V A A K+DP+GP+ Y+ V+ +A Sbjct: 253 NASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGPYVWITYAAVQSLAT 312 Query: 324 AITATKSTDPTKVAAYIHANSFKTPIGTVEYDKKGDLKSFKFVVFTWHKDATKTEAK 380 A+ T S +P + + AN T IG + +D+KGDLK F F VF WH D + T AK Sbjct: 313 ALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTAAK 369 >ZlivK [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component EcZ Escherichia coli O157:H7 EDL933 Length = 369 Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/357 (52%), Positives = 257/357 (71%), Gaps = 1/357 (0%) Query: 24 AISFAGIAQAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAGGAGGNKFEAVLMD 83 A++ + A A+ +K+A+ G M+G +AQ+GDM GA AI+ INA GG G+K V D Sbjct: 14 ALAISHTALADDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYD 73 Query: 84 DACEPKQAVAVANKIVSQGIKFVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAK 143 DAC+PKQAVAVANKIV+ GIK+VIGH+CS ST PASDIYE+EG++MI+P AT P+LT+ + Sbjct: 74 DACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQ-R 132 Query: 144 PHKYIFRTIGRDDQQGPAAAKYVVEKLKPKKAAVLHDKQSYGQGVATSVKAGLDAAKIPV 203 +++I RT G D QGP AAKY++E +KP++ A++HDKQ YG+G+A SV+ GL AA V Sbjct: 133 GYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANV 192 Query: 204 VVFEGVNAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLIMRQAREQGVKAVFMGPEGVG 263 V F+G+ AG+ D+SA+I +LK + +DFVY+GGY+PEMG ++RQAR G+K FMGPEGVG Sbjct: 193 VFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVG 252 Query: 264 NKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAQKRDPNGPFQMPAYSGVKVIAD 323 N ++ IAG A+EGMLVT+P + DPAN +V A A K+DP+GP+ Y+ V+ +A Sbjct: 253 NASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGPYVWITYAAVQSLAT 312 Query: 324 AITATKSTDPTKVAAYIHANSFKTPIGTVEYDKKGDLKSFKFVVFTWHKDATKTEAK 380 A+ T S +P + + AN T IG + +D+KGDLK F F VF WH D + T AK Sbjct: 313 ALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTAAK 369 >ECs4305 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Ecs Escherichia coli O157:H7 Length = 369 Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/357 (52%), Positives = 257/357 (71%), Gaps = 1/357 (0%) Query: 24 AISFAGIAQAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAGGAGGNKFEAVLMD 83 A++ + A A+ +K+A+ G M+G +AQ+GDM GA AI+ INA GG G+K V D Sbjct: 14 ALAISHTALADDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYD 73 Query: 84 DACEPKQAVAVANKIVSQGIKFVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAK 143 DAC+PKQAVAVANKIV+ GIK+VIGH+CS ST PASDIYE+EG++MI+P AT P+LT+ + Sbjct: 74 DACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQ-R 132 Query: 144 PHKYIFRTIGRDDQQGPAAAKYVVEKLKPKKAAVLHDKQSYGQGVATSVKAGLDAAKIPV 203 +++I RT G D QGP AAKY++E +KP++ A++HDKQ YG+G+A SV+ GL AA V Sbjct: 133 GYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANV 192 Query: 204 VVFEGVNAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLIMRQAREQGVKAVFMGPEGVG 263 V F+G+ AG+ D+SA+I +LK + +DFVY+GGY+PEMG ++RQAR G+K FMGPEGVG Sbjct: 193 VFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVG 252 Query: 264 NKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAQKRDPNGPFQMPAYSGVKVIAD 323 N ++ IAG A+EGMLVT+P + DPAN +V A A K+DP+GP+ Y+ V+ +A Sbjct: 253 NASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGPYVWITYAAVQSLAT 312 Query: 324 AITATKSTDPTKVAAYIHANSFKTPIGTVEYDKKGDLKSFKFVVFTWHKDATKTEAK 380 A+ T S +P + + AN T IG + +D+KGDLK F F VF WH D + T AK Sbjct: 313 ALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTAAK 369 >ZlivJ [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component EcZ Escherichia coli O157:H7 EDL933 Length = 386 Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/379 (50%), Positives = 267/379 (70%), Gaps = 8/379 (2%) Query: 7 LNRRLTKVAM-----AVGVAVSAISFAGIAQAETVKIAIAGPMTGAVAQYGDMVKAGALT 61 + RR+ + M A+ A++F+ +A AE +K+A+ G M+G VAQYGD GA Sbjct: 11 ITRRMGILRMNIKGKALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQEFTGAEQ 70 Query: 62 AIEQINAAGGAGGNKFEAVLMDDACEPKQAVAVANKIVSQGIKFVIGHVCSGSTIPASDI 121 A+ INA GG GNK + V DDAC+PKQAVAVANK+V+ GIK+VIGH+CS ST PASDI Sbjct: 71 AVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDI 130 Query: 122 YENEGVVMITPSATAPQLTEAKPHKYIFRTIGRDDQQGPAAAKYVVEKLKPKKAAVLHDK 181 YE+EG++MITP+ATAP+LT A+ ++ I RT G D QGP AAKY++EK+KP++ A++HDK Sbjct: 131 YEDEGILMITPAATAPELT-ARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDK 189 Query: 182 QSYGQGVATSVKAGLDAAKIPVVVFEGVNAGDSDYSAVITKLKSQGVDFVYFGGYHPEMG 241 Q YG+G+A +V+ GL VV F+G+ AG+ D+S ++ +LK + +DFVY+GGYHPEMG Sbjct: 190 QQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMG 249 Query: 242 LIMRQAREQGVKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAA 301 I+RQAR G+K FMGPEGV N ++ IAG ++EG+LVT P ++ PAN +V A A Sbjct: 250 QILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKA 309 Query: 302 QKRDPNGPFQMPAYSGVKVIADAITATKSTDPTKVAAYIHANSFKTPIGTVEYDKKGDLK 361 +K+DP+G F Y+ ++ + + +S DP ++A Y+ ANS T +G + +D+KGDLK Sbjct: 310 KKQDPSGAFVWTTYAALQSLQAGL--NQSDDPAEIAKYLKANSVDTVMGPLTWDEKGDLK 367 Query: 362 SFKFVVFTWHKDATKTEAK 380 F+F VF WH + T T+AK Sbjct: 368 GFEFGVFDWHANGTATDAK 386