BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0097.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1617 [O] COG2360 Leu/Phe-tRNA-protein transferase Rso Ralston... 275 8e-74 PA2617 [O] COG2360 Leu/Phe-tRNA-protein transferase Pae Pseudomo... 223 3e-58 XF1446 [O] COG2360 Leu/Phe-tRNA-protein transferase Xfa Xylella ... 213 2e-55 YPO1371 [O] COG2360 Leu/Phe-tRNA-protein transferase Ype Yersini... 211 8e-55 STM0955 [O] COG2360 Leu/Phe-tRNA-protein transferase Sty Salmone... 208 8e-54 >RSc1617 [O] COG2360 Leu/Phe-tRNA-protein transferase Rso Ralstonia solanacearum Length = 248 Score = 275 bits (702), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 141/236 (59%), Positives = 166/236 (70%), Gaps = 8/236 (3%) Query: 1 MISWLDVDSPFPDVSKAL---AEPAGLLAAGADLSPQRLLEAYRRGIFPWFSEGQPILWW 57 MI+WLD PFP V +AL +E GLLAA ADLSPQRLL AYR+GIFPW+++GQP+LWW Sbjct: 1 MIAWLDPHDPFPPVDRALGPDSEAPGLLAASADLSPQRLLIAYRQGIFPWYAQGQPVLWW 60 Query: 58 STDPRMVLYTDRFIISDSLKKTLRKIERSRHTDRRWEIRFDSAFRDVMRACAGPRR-DDA 116 STDPRMVL + F +S + +KTLR++ D WEIR D AFRDVM CA R Sbjct: 61 STDPRMVLRPEDFRVSTTFRKTLRRVL----DDPTWEIRIDHAFRDVMVDCATTARPGQH 116 Query: 117 GTWISKDIVDGYCGLHRAGYAHSAEVWLEGKLVGGAYGVSIGQMFYGESMFARVTDASKV 176 GTWI++D++ Y LHR GYAHS E W G+ VGG YGV++G MFYGESMFA TDASK+ Sbjct: 117 GTWITEDVIQAYTALHRRGYAHSVETWHGGRRVGGLYGVALGHMFYGESMFAHRTDASKI 176 Query: 177 ALAYLVHFLRRHGVQMIDCQQETPHLASLGAIPIPRNDFIKHLRVAIEAPQIGFWH 232 ALA L FL GV MIDCQQET HLASLG P+PR F+ H+R A AP I WH Sbjct: 177 ALAALCAFLGSRGVAMIDCQQETEHLASLGGAPVPRAAFLAHVREAASAPAIVPWH 232 >PA2617 [O] COG2360 Leu/Phe-tRNA-protein transferase Pae Pseudomonas aeruginosa Length = 226 Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 116/230 (50%), Positives = 148/230 (64%), Gaps = 9/230 (3%) Query: 1 MISWLD-VDSPFPDVSKALAEPAGLLAAGADLSPQRLLEAYRRGIFPWFSEGQPILWWST 59 M++WL D FP + KAL EP GLLAAG DL+PQRL+ AYR G FPW+ +GQPILWWS Sbjct: 1 MLTWLSRTDFDFPPLDKALQEPNGLLAAGGDLNPQRLVAAYRHGCFPWYQDGQPILWWSP 60 Query: 60 DPRMVLYTDRFIISDSLKKTLRKIERSRHTDRRWEIRFDSAFRDVMRACAGPRRDDAGTW 119 DPR VL+ D +S SL K LR+ +R+E+ F+ FR V++ACA PR GTW Sbjct: 61 DPRTVLFPDELHVSRSLAKCLRQ--------QRFEVTFNRDFRAVIQACAAPRNYADGTW 112 Query: 120 ISKDIVDGYCGLHRAGYAHSAEVWLEGKLVGGAYGVSIGQMFYGESMFARVTDASKVALA 179 I+ + Y LH G AHS EVW E +LVGG YG+++G++F+GESMF+R +ASKV Sbjct: 113 ITTPMQLAYQELHLRGIAHSVEVWQERQLVGGLYGLAMGRLFFGESMFSRADNASKVGFV 172 Query: 180 YLVHFLRRHGVQMIDCQQETPHLASLGAIPIPRNDFIKHLRVAIEAPQIG 229 LV LR G +IDCQ T HL SLGA I R +F +L+ + P G Sbjct: 173 TLVRHLRDAGFVLIDCQMPTRHLHSLGARAISRGEFADYLQRYRDQPPTG 222 >XF1446 [O] COG2360 Leu/Phe-tRNA-protein transferase Xfa Xylella fastidiosa 9a5c Length = 243 Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 109/217 (50%), Positives = 137/217 (63%), Gaps = 9/217 (4%) Query: 8 DSPFPDVSKALAEPAGLLAAGADLSPQRLLEAYRRGIFPWFSEGQPILWWSTDPRMVLYT 67 ++PFP AL EP GLLA G DL+PQRLL AYR GIFPWF+EGQP LWWS DPR V + Sbjct: 13 NTPFPPAEYALREPNGLLAIGGDLTPQRLLAAYRNGIFPWFTEGQPPLWWSPDPRTVFRS 72 Query: 68 DRFIISDSLKKTLRKIERSRHTDRRWEIRFDSAFRDVMRACAG-PRRDDAGTWISKDIVD 126 D +S ++ LR W +R D+ F V+ ACA PRR GTWI+ ++ + Sbjct: 73 DSIHLSRRFRRNLRT--------STWTVRADTMFAAVIDACASTPRRGQDGTWITANMRE 124 Query: 127 GYCGLHRAGYAHSAEVWLEGKLVGGAYGVSIGQMFYGESMFARVTDASKVALAYLVHFLR 186 Y LH+ YAHS EV+ LVGG YGV++G+MF+GESMF+ ASK+ALA L HFL Sbjct: 125 AYLTLHQHSYAHSVEVFDGTMLVGGIYGVALGRMFFGESMFSTRNGASKIALASLAHFLH 184 Query: 187 RHGVQMIDCQQETPHLASLGAIPIPRNDFIKHLRVAI 223 H +ID Q E HL +LGA PR DF+ ++R I Sbjct: 185 THSAPLIDAQVENQHLLNLGAERWPRKDFLAYVRRLI 221 >YPO1371 [O] COG2360 Leu/Phe-tRNA-protein transferase Ype Yersinia pestis Length = 236 Score = 211 bits (538), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 108/209 (51%), Positives = 137/209 (65%), Gaps = 10/209 (4%) Query: 11 FPDVSKALAEPAGLLAAGADLSPQRLLEAYRRGIFPWFSEGQPILWWSTDPRMVLYTDRF 70 FP AL EP GLLA G DL+ RLL AY+RGIFPWF+ G+ ILWWS DPR VL+ + Sbjct: 13 FPSPELALREPNGLLALGGDLTAPRLLAAYQRGIFPWFNPGEMILWWSPDPRAVLFPEDL 72 Query: 71 IISDSLKKTLRKIERSRHTDRRWEIRFDSAFRDVMRACAGPRRDDAGTWISKDIVDGYCG 130 IS S+++ +R H R+ + + AF DV+ ACA R D GTWI +D+ YC Sbjct: 73 HISRSMRRFIR------HCPYRFTL--NHAFADVISACATER--DEGTWIGRDVQQAYCQ 122 Query: 131 LHRAGYAHSAEVWLEGKLVGGAYGVSIGQMFYGESMFARVTDASKVALAYLVHFLRRHGV 190 LH G+AHS EVWLE +LVGG YGV++G +F GESMF+R +ASK AL H +HG Sbjct: 123 LHALGHAHSLEVWLENELVGGLYGVAVGAVFCGESMFSRADNASKSALMVFCHHFTQHGG 182 Query: 191 QMIDCQQETPHLASLGAIPIPRNDFIKHL 219 ++IDCQ H ASLGA+ IPRN F++ L Sbjct: 183 ELIDCQVLNAHTASLGAVEIPRNFFLQQL 211 >STM0955 [O] COG2360 Leu/Phe-tRNA-protein transferase Sty Salmonella typhimurium LT2 Length = 234 Score = 208 bits (530), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 114/230 (49%), Positives = 139/230 (60%), Gaps = 11/230 (4%) Query: 11 FPDVSKALAEPAGLLAAGADLSPQRLLEAYRRGIFPWFSEGQPILWWSTDPRMVLYTDRF 70 FP AL EP GLLA G DLSP RLL AY+ GIFPWFS G PILWWS DPR VL+ ++F Sbjct: 13 FPSPEGALREPNGLLALGGDLSPARLLMAYQHGIFPWFSPGDPILWWSPDPRAVLWPEKF 72 Query: 71 IISDSLKKTLRKIERSRHTDRRWEIRFDSAFRDVMRACAGPRRDDAGTWISKDIVDGYCG 130 +S S+K+ H + + + AF V+ CA R D GTWI++ I + Y Sbjct: 73 HLSRSMKRF--------HNASPYRVTLNYAFDRVIDGCANHR--DEGTWITRGIEEAYRR 122 Query: 131 LHRAGYAHSAEVWLEGKLVGGAYGVSIGQMFYGESMFARVTDASKVALAYLVHFLRRHGV 190 LH G+AHS EVW + +LVGG YGVS G +F GESMF+R +ASK AL RHG Sbjct: 123 LHELGHAHSIEVWRDRELVGGMYGVSQGALFCGESMFSRQENASKTALLVFCAEFTRHGG 182 Query: 191 QMIDCQQETPHLASLGAIPIPRNDFIKHLRVAIEAPQIG-FWHPLDLFPP 239 ++IDCQ H ASLGAI IPR D++ HL + P FW P LF P Sbjct: 183 KLIDCQVLNSHTASLGAIEIPRRDYLDHLAALRQQPLASRFWVPRTLFLP 232