BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0093.p (250 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value NMB1509 [E] COG0765 ABC-type amino acid transport system, permea... 184 1e-46 NMA1709 [E] COG0765 ABC-type amino acid transport system, permea... 184 1e-46 TM0592 [E] COG0765 ABC-type amino acid transport system, permeas... 163 3e-40 DR2155 [E] COG0765 ABC-type amino acid transport system, permeas... 159 8e-39 lin2352_2 [E] COG0765 ABC-type amino acid transport system, perm... 150 3e-36 >NMB1509 [E] COG0765 ABC-type amino acid transport system, permease component Nme Neisseria meningitidis MC58 Length = 248 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 108/242 (44%), Positives = 153/242 (63%), Gaps = 1/242 (0%) Query: 5 FQWEIIGEYLPLFIEGTWMTIKVALICVISGTCWGLALGVGRLAEA-RHGFWKYFLRYAV 63 F+++II EY +F+ G T+ + ++ G+ GL L + RL + G L +A+ Sbjct: 3 FRFDIIYEYRWMFLYGALTTLGLTVVATAGGSVLGLLLALARLIHLEKAGAPMRVLAWAL 62 Query: 64 QLPVRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDIAREIRSQYGAFASAVL 123 + YV+ RGTPLFVQI++ + P ++PS G+++SG+ A +R YG + L Sbjct: 63 RKVSLLYVTLFRGTPLFVQIVIWAYVWFPFFVHPSDGILVSGEAAIALRRGYGPLIAGSL 122 Query: 124 AITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMTYMQTLRKVVLPQAFRRMLPPLGNNA 183 A+ NSGAY+ EIFRAGIQSID+GQ EA+RSLG+TY Q +R V+LPQA RRMLPPL + Sbjct: 123 ALIANSGAYICEIFRAGIQSIDKGQMEAARSLGLTYPQAMRYVILPQALRRMLPPLASEF 182 Query: 184 IAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISLVYWAITLLLSAFVRHLENR 243 I ++KDSSL S I +AELAY T++G Y+ Y EP T++L+Y +T L LE R Sbjct: 183 ITLLKDSSLLSVIAVAELAYVQNTITGRYSVYEEPLYTVALIYLLMTTFLGWIFLRLEKR 242 Query: 244 YG 245 Y Sbjct: 243 YN 244 >NMA1709 [E] COG0765 ABC-type amino acid transport system, permease component NmA Neisseria meningitidis Z2491 Length = 248 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 108/242 (44%), Positives = 153/242 (63%), Gaps = 1/242 (0%) Query: 5 FQWEIIGEYLPLFIEGTWMTIKVALICVISGTCWGLALGVGRLAEA-RHGFWKYFLRYAV 63 F+++II EY +F+ G T+ + ++ G+ GL L + RL + G L +A+ Sbjct: 3 FRFDIIYEYRWMFLYGALTTLGLTVVATAGGSVLGLLLALARLIHLEKAGAPMRVLAWAL 62 Query: 64 QLPVRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDIAREIRSQYGAFASAVL 123 + YV+ RGTPLFVQI++ + P ++PS G+++SG+ A +R YG + L Sbjct: 63 RKVSLLYVTLFRGTPLFVQIVIWAYVWFPFFVHPSDGILVSGEAAIALRRGYGPLIAGSL 122 Query: 124 AITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMTYMQTLRKVVLPQAFRRMLPPLGNNA 183 A+ NSGAY+ EIFRAGIQSID+GQ EA+RSLG+TY Q +R V+LPQA RRMLPPL + Sbjct: 123 ALIANSGAYICEIFRAGIQSIDKGQMEAARSLGLTYPQAMRYVILPQALRRMLPPLASEF 182 Query: 184 IAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISLVYWAITLLLSAFVRHLENR 243 I ++KDSSL S I +AELAY T++G Y+ Y EP T++L+Y +T L LE R Sbjct: 183 ITLLKDSSLLSVIAVAELAYVQNTITGRYSVYEEPLYTVALIYLLMTTFLGWIFLRLEKR 242 Query: 244 YG 245 Y Sbjct: 243 YN 244 >TM0592 [E] COG0765 ABC-type amino acid transport system, permease component Tma Thermotoga maritima Length = 216 Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 98/239 (41%), Positives = 144/239 (60%), Gaps = 29/239 (12%) Query: 6 QW-EIIGEYLPLFIEGTWMTIKVALICVISGTCWGLALGVGRLAEARHGFWKYFLRYAVQ 64 +W +I + LPL ++G T+++ + V+ G G+ +G+GRL++ R +RY Sbjct: 3 EWLSVIVDNLPLLLKGALRTLQLTSLAVLIGLAIGIFVGMGRLSKYR------IIRY--- 53 Query: 65 LPVRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDIAREIRSQYGAFASAVLA 124 P YV FLRGTPL VQ+ L++F L P GL ++ F +AV+A Sbjct: 54 -PSSVYVEFLRGTPLMVQLFLVYFGL------PELGL------------EFDRFTAAVIA 94 Query: 125 ITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMTYMQTLRKVVLPQAFRRMLPPLGNNAI 184 + +NSGAYV+EI RAGIQS+ +GQ EA+RSLGM++ Q + V+LPQAFR +LP LGN I Sbjct: 95 LGINSGAYVAEIVRAGIQSVPKGQYEAARSLGMSHAQAMIYVILPQAFRHILPALGNEFI 154 Query: 185 AIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISLVYWAITLLLSAFVRHLENR 243 A+ KDSSLA IG EL +A+ + + Y ++L+Y+AIT +S V+ +E R Sbjct: 155 ALAKDSSLAMVIGTVELMRSAQYIVSRTFMSFPIYGGVALIYFAITFSVSRLVKFVEGR 213 >DR2155 [E] COG0765 ABC-type amino acid transport system, permease component Dra Deinococcus radiodurans Length = 291 Score = 159 bits (401), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 95/236 (40%), Positives = 137/236 (58%), Gaps = 22/236 (9%) Query: 8 EIIGEYLPLFIEGTWMTIKVALICVISGTCWGLALGVGRLAEARHGFWKYFLRYAVQLPV 67 E +G+Y LF+EG MT+K+ L+ + G G+ G+ R + + V+ P Sbjct: 72 EPVGQYADLFVEGAQMTLKLTLVSGLIGLLVGMIAGIMRSSPS----------ALVRAPA 121 Query: 68 RFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDIAREIRSQYGAFASAVLAITL 127 F++ +RGTPL VQIL ++ AL P+L I + F SAV+A+ L Sbjct: 122 SFFIWLIRGTPLLVQILFVYNALPPLLKTIG------------INLELNEFWSAVIALAL 169 Query: 128 NSGAYVSEIFRAGIQSIDRGQSEASRSLGMTYMQTLRKVVLPQAFRRMLPPLGNNAIAIV 187 N GAY +E+ RAGI ++ RGQSEA+RSLG++ QT+ VVLPQA R ++PPL NN +A++ Sbjct: 170 NVGAYNAEVIRAGILAVPRGQSEAARSLGLSAGQTMNAVVLPQALRIVVPPLVNNLVALL 229 Query: 188 KDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISLVYWAITLLLSAFVRHLENR 243 KDSSLAS I L EL + + VS + T++ VY A+T +L+ F LE R Sbjct: 230 KDSSLASTIALLELTLSGQRVSSESFQPVPVLTTVAAVYLALTTVLTLFTDQLEKR 285 >lin2352_2 [E] COG0765 ABC-type amino acid transport system, permease component Lin Listeria innocua Length = 215 Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/242 (37%), Positives = 134/242 (55%), Gaps = 31/242 (12%) Query: 7 WEIIGEYLPLFIEGTWMTIKVALICVISGTCWGLALGVGRLAEARHGFWKYFLRYAVQLP 66 +E G Y FI GT +TI +A I V+ G G L + +LA+ R W P Sbjct: 5 YEKYGNY---FITGTLITIALAAIGVLCGAILGSLLALMKLAKTRWLRW----------P 51 Query: 67 VRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDIAREIRSQYGAFASAVLAIT 126 Y+ F+RGTPL +QI ++ F G I+ D++ AF S +A++ Sbjct: 52 AACYIEFVRGTPLLIQIFIVFF----------GTQIIGMDVS--------AFVSGCIALS 93 Query: 127 LNSGAYVSEIFRAGIQSIDRGQSEASRSLGMTYMQTLRKVVLPQAFRRMLPPLGNNAIAI 186 LNS AYV+EI RAGI ++++GQ EA+RSLGMT ++R ++LPQA + +LP LGN + + Sbjct: 94 LNSAAYVAEIIRAGISAVNKGQMEAARSLGMTQGASMRYIILPQAVKNILPALGNEFVTV 153 Query: 187 VKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISLVYWAITLLLSAFVRHLENRYGK 246 +K+SS+ S IG+ EL + V GA + + P + SL+Y+ +T LS + E R Sbjct: 154 IKESSIVSVIGVTELMFMTGVVQGASFKPFIPLIITSLIYFVLTFSLSRLLGVAERRMRT 213 Query: 247 GD 248 D Sbjct: 214 SD 215