BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0092.p (259 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value NMB1612 [ET] COG0834 ABC-type amino acid transport/signal transd... 187 3e-47 NMA1811 [ET] COG0834 ABC-type amino acid transport/signal transd... 184 1e-46 AF0231 [ET] COG0834 ABC-type amino acid transport/signal transdu... 155 1e-37 alr3187_1 [ET] COG0834 ABC-type amino acid transport/signal tran... 135 1e-31 glnH [ET] COG0834 ABC-type amino acid transport/signal transduct... 128 1e-29 >NMB1612 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Nme Neisseria meningitidis MC58 Length = 268 Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 141/232 (60%), Gaps = 1/232 (0%) Query: 19 TAVSAQAADQTYVVGAGGTYRPFEFETPKKELVGFDIDIIKAIAKASGFQIKLVSTPWEG 78 TA A D+ Y V + + PFE K + GFD+D++ A+AKA F+I+ PW+ Sbjct: 28 TAAPAANPDKVYRVASNAEFAPFESLDSKGNVEGFDVDLMNAMAKAGNFKIEFKHQPWDS 87 Query: 79 IFATLGQGDRDIIISGITITEKRAQMVDFSLPYFPAEQVIITGAGSKVAALADLKKL-QV 137 +F L GD D+++SG+TIT+ R Q +DFS PYF QV++ G KV++ DLK + +V Sbjct: 88 LFPALNNGDADVVMSGVTITDDRKQSMDFSDPYFEITQVVLVPKGKKVSSSEDLKNMNKV 147 Query: 138 GVVNSTAGDIILSEEVGKSSTAIHRFDNTPLMLEELYRGGVDAAIGDVGVIKFYIKSHPE 197 GVV GD +S+ +G + I RF+N PL+++EL GG+D+ + D VI Y+K++P Sbjct: 148 GVVTGYTGDFSVSKLLGNDNPKIARFENVPLIIKELENGGLDSVVSDSAVIANYVKNNPA 207 Query: 198 KQFKVVGDAKFTRQYFGIAVKKGNKELQDKINAGLKKIVADGTYAKIYKEWF 249 K V FT +++GIAV+KG++ +N L+K+ G Y KIY ++F Sbjct: 208 KGMDFVTLPDFTTEHYGIAVRKGDEATVKMLNDALEKVRESGEYDKIYAKYF 259 >NMA1811 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain NmA Neisseria meningitidis Z2491 Length = 268 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 138/224 (61%), Gaps = 1/224 (0%) Query: 27 DQTYVVGAGGTYRPFEFETPKKELVGFDIDIIKAIAKASGFQIKLVSTPWEGIFATLGQG 86 D+ Y V + + PFE K + GFD+D++ A+AKA F+I+ PW+ +F L G Sbjct: 36 DKVYRVASNAEFAPFESLDSKGNVEGFDVDLMNAMAKAGNFKIEFKHQPWDSLFPALNNG 95 Query: 87 DRDIIISGITITEKRAQMVDFSLPYFPAEQVIITGAGSKVAALADLKKL-QVGVVNSTAG 145 D D+++SG+TIT+ R Q +DFS PYF QV++ G K+++ DLK + +VGVV G Sbjct: 96 DADVVMSGVTITDDRKQSMDFSDPYFEITQVVLVPKGKKISSSEDLKNMNKVGVVTGYTG 155 Query: 146 DIILSEEVGKSSTAIHRFDNTPLMLEELYRGGVDAAIGDVGVIKFYIKSHPEKQFKVVGD 205 D +S+ +G + I RF+N PL+++EL GG+D+ + D VI Y+K++P K V Sbjct: 156 DFSVSKLLGNDNPKIARFENVPLIIKELENGGLDSVVSDSAVIANYVKNNPTKGMDFVTL 215 Query: 206 AKFTRQYFGIAVKKGNKELQDKINAGLKKIVADGTYAKIYKEWF 249 FT +++GIAV+KG++ +N LKK+ G Y KIY ++F Sbjct: 216 PDFTTEHYGIAVRKGDEATVKMLNDALKKVRESGEYDKIYAKYF 259 >AF0231 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Afu Archaeoglobus fulgidus Length = 264 Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/224 (44%), Positives = 127/224 (56%), Gaps = 7/224 (3%) Query: 31 VVGAGGTYRPFEFETPKK-ELVGFDIDIIKAIAKASGFQIKLVSTPWEGIFATLGQGDRD 89 VG+ Y PFEF K E GFDID++K IAK G + K V+T W+GI L D Sbjct: 41 TVGSDIAYPPFEFTDEKTGEYAGFDIDLMKEIAKRMGLEAKFVNTAWDGIIPGLLAHKYD 100 Query: 90 IIISGITITEKRAQMVDFSLPYFPAEQVIITGAG-SKVAALADLKKLQVGVVNSTAGDII 148 +I S +TITE+RA+ VDFS PYF A+QVIIT A + + + DL V V T GD Sbjct: 101 VICSAMTITEERAKQVDFSDPYFEAKQVIITRADETDIQDVEDLNGKVVAVQQGTTGDFA 160 Query: 149 ---LSEEVGKSSTAIHRFDNTPLMLEELYRGGVDAAIGDVGVIKFYIKSHPEKQFKVVGD 205 L +E G I RF+ TP L + +G DAAI D V K +P +++V Sbjct: 161 AQRLKDEKG-IQLEIKRFEGTPEALMAVQKGDADAAIIDNFVAYIAAKENP-GLYRIVES 218 Query: 206 AKFTRQYFGIAVKKGNKELQDKINAGLKKIVADGTYAKIYKEWF 249 +F +Y+GIAV K N L +KIN LK+I DGTY KIY +WF Sbjct: 219 DEFAPEYYGIAVNKDNPALLEKINEVLKEIKEDGTYDKIYNKWF 262 >alr3187_1 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Nos Nostoc sp. PCC 7120 Length = 261 Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 128/252 (50%), Gaps = 15/252 (5%) Query: 12 SVLALSLTAVSAQAAD-QTYVVGAGGTYRPFEFETPKKELVGFDIDIIKAIAKASGFQIK 70 S++ L LT S + +T + + PFEF L GF ID++ AIA A+ ++ Sbjct: 14 SLICLFLTGCSGNLSQGKTLRIATEPAFPPFEFTAQGGNLQGFSIDLMNAIASAANLKVN 73 Query: 71 LVSTPWEGIFATLGQGDRDIIISGITITEKRAQMVDFSLPYFPAEQVI-ITGAGSKVAAL 129 S P++GI L D IS ITIT +RA+ V FS PYF A I I + + Sbjct: 74 FQSLPFDGIIPALQSRTVDAAISSITITAERAETVAFSRPYFKAGLAIAIRSSNEDITGF 133 Query: 130 ADLKKLQVGVVNSTAGDIILSEEVGKSST----AIHRFDNTPLMLEELYRGGVDAAIGDV 185 LK ++ V T G GK+ + I FD+ PL L+EL VDA I D Sbjct: 134 DSLKNKKIAVQIGTTG-------AGKAKSIPGAQIRSFDSAPLALQELLNNNVDAVINDA 186 Query: 186 GVIKFYIKSHPEKQFKVVGDAKFTRQYFGIAVKKGNKELQDKINAGLKKIVADGTYAKIY 245 V + I + + KVV + T +Y+GIA + + L IN GL +++ADG+Y++IY Sbjct: 187 PVTLYAINTGNLQGIKVV-EKLLTEEYYGIATAQNSPYLA-LINDGLNRVLADGSYSQIY 244 Query: 246 KEWFDANVPTLP 257 ++WF P+LP Sbjct: 245 QKWFKVEPPSLP 256 >glnH [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Eco Escherichia coli K12 Length = 248 Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/244 (36%), Positives = 136/244 (55%), Gaps = 6/244 (2%) Query: 8 LLAGSVLALSLT-AVSAQAADQTYVVGAGGTYRPFEFETPKKELVGFDIDIIKAIAKASG 66 +L S+ AL+L AVS+ AAD+ VV + PFEF+ K VGFD+D+ AIAK Sbjct: 4 VLKVSLAALTLAFAVSSHAADKKLVVATDTAFVPFEFKQGDK-YVGFDVDLWAAIAKELK 62 Query: 67 FQIKLVSTPWEGIFATLGQGDRDIIISGITITEKRAQMVDFSLPYFPAEQVIITGAGSK- 125 +L + GI L + D+ ++GITIT++R + +DFS Y+ + +++ A + Sbjct: 63 LDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNND 122 Query: 126 VAALADLKKLQVGVVNSTAGDIILSEEVGKSSTAIHRFDNTPLMLEELYRGGVDAAIGDV 185 V ++ DL +V V S G + ++ K+ + +F N EL DA + D Sbjct: 123 VKSVKDLDG-KVVAVKSGTGSVDYAKANIKTKD-LRQFPNIDNAYMELGTNRADAVLHDT 180 Query: 186 GVIKFYIKSHPEKQFKVVGDAKFTRQYFGIAVKKGNKELQDKINAGLKKIVADGTYAKIY 245 I ++IK+ QFK VGD+ +QY GIA KG+ EL+DK+N LK + +GTY +IY Sbjct: 181 PNILYFIKTAGNGQFKAVGDSLEAQQY-GIAFPKGSDELRDKVNGALKTLRENGTYNEIY 239 Query: 246 KEWF 249 K+WF Sbjct: 240 KKWF 243