BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0088.p         (155 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMA0756 [K] COG1522 Transcriptional regulators NmA Neisseria men...   136   1e-32
NMB0573 [K] COG1522 Transcriptional regulators Nme Neisseria men...   136   2e-32
RSc3102 [K] COG1522 Transcriptional regulators Rso Ralstonia sol...   133   1e-31
PA4508 [K] COG1522 Transcriptional regulators Pae Pseudomonas ae...   126   2e-29
RSp1377 [K] COG1522 Transcriptional regulators Rso Ralstonia sol...   125   3e-29

>NMA0756 [K] COG1522 Transcriptional regulators NmA Neisseria meningitidis
           Z2491
          Length = 160

 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 106/152 (69%), Gaps = 3/152 (1%)

Query: 1   MDKLDVKILELLQQDGRMSNVDISENIHLSPPQCLRRVRVLEEQGVIRRYAALVAPAAVG 60
           +DK D+KIL++LQ++GR++NV++SE + LSP  CLRR++ LE+ G++R+YAAL++P +V 
Sbjct: 6   LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVN 65

Query: 61  LDVTAFVALSLDRAQFKQVRE-VESVIRDFPEIIECYTISGDFDYLLKVVSHDLKSLSHF 119
           L + AF+ +S+ +A  K  RE   + +R +PE++ C+ ++G+ DYLL+    D+ + SHF
Sbjct: 66  LGLQAFIRVSIRKA--KDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHF 123

Query: 120 LTDRLMQVPGVAGLRSMICLEEVKPLSGLPIR 151
           + D L+   GV   +S   L+E+K  + LP+ 
Sbjct: 124 VLDTLLSHHGVQDAQSSFVLKEIKQTTSLPLN 155


>NMB0573 [K] COG1522 Transcriptional regulators Nme Neisseria meningitidis
           MC58
          Length = 187

 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 106/151 (70%), Gaps = 3/151 (1%)

Query: 1   MDKLDVKILELLQQDGRMSNVDISENIHLSPPQCLRRVRVLEEQGVIRRYAALVAPAAVG 60
           +DK D+KIL++LQ++GR++NV++SE + LSP  CLRR++ LE+ G++R+YAAL++P +V 
Sbjct: 33  LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVN 92

Query: 61  LDVTAFVALSLDRAQFKQVRE-VESVIRDFPEIIECYTISGDFDYLLKVVSHDLKSLSHF 119
           L + AF+ +S+ +A  K  RE   + +R +PE++ C+ ++G+ DYLL+    D+ + SHF
Sbjct: 93  LGLQAFIRVSIRKA--KDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHF 150

Query: 120 LTDRLMQVPGVAGLRSMICLEEVKPLSGLPI 150
           + D L+   GV   +S   L+E+K  + LP+
Sbjct: 151 VLDTLLSHHGVQDAQSSFVLKEIKHTTSLPL 181


>RSc3102 [K] COG1522 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 162

 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 102/155 (65%), Gaps = 5/155 (3%)

Query: 1   MDKLDVKILELLQQDGRMSNVDISENIHLSPPQCLRRVRVLEEQGVIRRYAALVAPAAVG 60
           +DK+D KILE+LQ +GR++N++++E ++LSP  CLRR+R LEE GVIR+YAAL+ P  +G
Sbjct: 6   LDKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIRQYAALLDPGKIG 65

Query: 61  LDVTAFVALSLDRAQFKQVREVES-----VIRDFPEIIECYTISGDFDYLLKVVSHDLKS 115
           L ++A++ + L++       +  S      +  +PE++ CY ++G+ DYLLKV   D+  
Sbjct: 66  LGLSAYINVRLEKQGGAPKGKAPSDIFRAAVATWPEVVTCYAMTGEMDYLLKVFVEDMDH 125

Query: 116 LSHFLTDRLMQVPGVAGLRSMICLEEVKPLSGLPI 150
            + F+ D+L+  P V  ++S   LE +K  + LP+
Sbjct: 126 FARFIRDQLLAHPAVIDVKSSFALERIKDTTALPV 160


>PA4508 [K] COG1522 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 157

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 98/150 (65%)

Query: 1   MDKLDVKILELLQQDGRMSNVDISENIHLSPPQCLRRVRVLEEQGVIRRYAALVAPAAVG 60
           +D  D +IL  LQ+DGR+SNV ++E I LSP  CLRRVR+LEE GVIR Y A +    VG
Sbjct: 3   LDAYDHRILAALQRDGRLSNVQLAEEIGLSPSPCLRRVRLLEEAGVIRGYQASIDRDEVG 62

Query: 61  LDVTAFVALSLDRAQFKQVREVESVIRDFPEIIECYTISGDFDYLLKVVSHDLKSLSHFL 120
           L +T FV + ++R + +Q       + D PE+I  + +SG+ D+LL+VV  DL++    L
Sbjct: 63  LGLTVFVGIKVERHRQEQAEAFHRAVVDLPEVISVHLVSGESDFLLQVVVPDLRAYERLL 122

Query: 121 TDRLMQVPGVAGLRSMICLEEVKPLSGLPI 150
           ++ L+++PGV+ +RS   ++ VK  + LP+
Sbjct: 123 SETLLRLPGVSDIRSNFAIKTVKAPAPLPL 152


>RSp1377 [K] COG1522 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 152

 Score =  125 bits (315), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 96/150 (64%)

Query: 1   MDKLDVKILELLQQDGRMSNVDISENIHLSPPQCLRRVRVLEEQGVIRRYAALVAPAAVG 60
            D +D +IL  LQ+DGR+ N+++++ + LSP  CLRRVR+LEE GVI RY A++ PA VG
Sbjct: 3   FDAIDRRILSALQRDGRLQNIELAKEVGLSPSPCLRRVRLLEEAGVIERYVAVLNPAKVG 62

Query: 61  LDVTAFVALSLDRAQFKQVREVESVIRDFPEIIECYTISGDFDYLLKVVSHDLKSLSHFL 120
             ++ F  + L       V    + I+  PE++EC+ ++GD D+LL+VV+ DL+    F 
Sbjct: 63  KGLSVFARIWLKGQDAATVDAFTAAIQQLPEVVECHLMAGDCDFLLRVVAADLEDYRQFQ 122

Query: 121 TDRLMQVPGVAGLRSMICLEEVKPLSGLPI 150
              L ++PGV  +++ + ++++K  S LP+
Sbjct: 123 IQYLTRIPGVQSVKTEVPMQKIKLTSALPV 152