BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0087.p         (171 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1980 [S] COG3148 Uncharacterized conserved protein Vch Vibrio ...    94   1e-19
PA1424 Non COG                                                         89   4e-18

>VC1980 [S] COG3148 Uncharacterized conserved protein Vch Vibrio cholerae
          Length = 200

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 85/168 (50%), Gaps = 3/168 (1%)

Query: 1   LILQHPLEVAQAKGSGRLLHLSLTDSVLAQGEQFDEA-VLRDLLFGGGIQPVLLYPRTPG 59
           +ILQHP E  +  G+ R+L LSL +  L  GE F E   L  LL    +   +LYP    
Sbjct: 30  IILQHPTEQKRPLGTARILSLSLANCRLLVGEDFREHDELNQLLAEPDVDYYVLYPNEHA 89

Query: 60  EPAGALPDLSTPERLRLVILDATWRKSRKMLYLNPLLQVLPRLPLVDPPASQYRIRKAHR 119
           +    +  L+T  + R+++LD TW+K+ KM  +N  L  LP L L D     YRIRKA  
Sbjct: 90  QECTKI-SLTTARKTRVILLDGTWKKAYKMWQINTQLHDLPSLHLPDECVGHYRIRKAPD 148

Query: 120 ADQLSTLEAACHALGQLEDAAARYLPLLQAFDGFVTQQSSYVPADVLN 167
              LST+EA  H L Q +     + PLL+ FD  +  Q   +P  V  
Sbjct: 149 DTALSTVEAGYHLLQQWQ-PERDFSPLLKVFDAMIQYQIDQMPEGVFE 195


>PA1424 Non COG
          Length = 203

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 5/165 (3%)

Query: 1   LILQHPLEVAQAKGSGRLLHLSLTDSVLAQGEQFDEAVLRDLLFGGGIQPVLLYPRTPGE 60
           L+LQHP EV  A  +  L  L L ++ L  GE+F E   R      G +  LL+P     
Sbjct: 31  LVLQHPSEVGHALNTAGLAVLGLCNAELRVGERFAEETWRV----PGYRACLLFPGEQAR 86

Query: 61  PAGALPDLSTPERLRLVILDATWRKSRKMLYLNPLLQVLPRLPLVDPPASQYRIRKAHRA 120
               +   +  E L LV+ D TWRK+RK+L+LNP L  LPR+ L +  AS+YR+RKA   
Sbjct: 87  ALAEMAAEAAGEPLLLVVPDGTWRKARKLLHLNPALAALPRVSLAEGMASRYRLRKAPGE 146

Query: 121 DQLSTLEAACHALGQLEDAAARYLPLLQAFDGFVTQQSSYVPADV 165
             LST+EA   AL +LE A   +  LL+ FD  +  Q + +  D 
Sbjct: 147 GALSTIEAIAAALDELE-APRTHEALLKPFDALIEGQIAAMGEDT 190