BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0084.p         (189 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3335 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Rso...   244   1e-64
AGc3984 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Atu...   198   7e-51
SMa1985 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Sme...   153   2e-37
mlr3829 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Mlo...   102   4e-22

>RSc3335 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Rso Ralstonia
           solanacearum
          Length = 318

 Score =  244 bits (622), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/177 (64%), Positives = 140/177 (79%), Gaps = 1/177 (0%)

Query: 1   MEQRLQTAATNGVRSLIVRAGDFFGPHAGNNWFSQGLVKPGKTPASIIYPGKPGIGHQWT 60
           +E+RL+ AA +GVRSLIVRAGDFFGP AGNNWF+ GLV+PG+   ++ YPG  GIGHQW 
Sbjct: 142 LERRLRAAADDGVRSLIVRAGDFFGPDAGNNWFAGGLVRPGQAVRTVTYPGAHGIGHQWA 201

Query: 61  YLPDLAETMSRLLERESSLESFARFHMNGHWDADGTQMTDAIRRVLGNARLPVRGFPWWL 120
           Y+PD+AETM RLLE++  L +FA FHM GHWDADGTQMT+AIRR +G   +  R FPWW 
Sbjct: 202 YIPDVAETMLRLLEQDDRLPAFAVFHMRGHWDADGTQMTEAIRRAVGRP-IRTRRFPWWA 260

Query: 121 LGPAAPFVPLFREMKEMRYLWQQPVRMDNVRLLQVLDEEPHTPLDEAVRATLRGLGC 177
           L   APF  L RE++EMRYLW+QP+RMDN +L++ L  EPHTP D+AVRATLRGL C
Sbjct: 261 LPLMAPFSVLMRELREMRYLWRQPIRMDNAKLVRTLGAEPHTPWDDAVRATLRGLRC 317


>AGc3984 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 373

 Score =  198 bits (503), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 99/178 (55%), Positives = 119/178 (66%), Gaps = 1/178 (0%)

Query: 1   MEQRLQTAATNGVRSLIVRAGDFFGPHAGNNWFSQGLVKPGKTPASIIYPGKPGIGHQWT 60
           ME+RL+ A+  GV  LIVRAGDFFGP A NNWFSQ LV+PGK   S+  P  P  GHQW 
Sbjct: 178 MERRLKMASMRGVPVLIVRAGDFFGPDAKNNWFSQMLVRPGKPVRSVQNPAAPHAGHQWA 237

Query: 61  YLPDLAETMSRLLERESSLESFARFHMNGHWDADGTQMTDAIRRVLGNARLPVRGFPWWL 120
           YLPD+AET+ RLL+R   L  FA +HM G WD DG Q+  AI R +G   + +R   W  
Sbjct: 238 YLPDVAETIGRLLDRSGELPPFAVYHMEGFWDFDGLQLVGAIERAVGRP-VKMRRMSWLA 296

Query: 121 LGPAAPFVPLFREMKEMRYLWQQPVRMDNVRLLQVLDEEPHTPLDEAVRATLRGLGCL 178
           +  AAPFVPLFRE+ EM+YLW  P+RM N +L   L  EP TP+D AV ATL  LGC+
Sbjct: 297 IKLAAPFVPLFREVLEMQYLWHMPLRMSNGKLTDFLGAEPKTPVDIAVSATLTSLGCI 354


>SMa1985 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Sme
           Sinorhizobium meliloti
          Length = 346

 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 114/187 (60%), Gaps = 4/187 (2%)

Query: 1   MEQRLQTAATNGVRSLIVRAGDFFGPHAGNNWFSQGLVKPGKTPASIIYPGKPGIGHQWT 60
           +E++L  A+   V SLI+RAGDFFGP    +WF+Q +V+PG+ P         G+ H + 
Sbjct: 160 LERKLAEASPE-VSSLILRAGDFFGPGTRASWFAQAMVQPGR-PVRKFTSMASGVPHAYA 217

Query: 61  YLPDLAETMSRLLERESSLESFARFHMNGHWDADGTQMTDAIRRVLGNARLPVRGFPWWL 120
           YLPDLA   + L+     L ++      GHWD  GTQM DA+RR +    +P R FPWW+
Sbjct: 218 YLPDLAAAFAGLMAIPERLRAYETVQFAGHWDPTGTQMRDAVRRAVAQ-DVPERAFPWWM 276

Query: 121 LGPAAPFVPLFREMKEMRYLWQQPVRMDNVRLLQVLDEEPHTPLDEAVRATLRGLGCLPA 180
           +  AAPF    +E  E+   W+ P+R+DN RL+ +L  EPHTPLD+A+ A L  +GCL A
Sbjct: 277 MRLAAPFGGFPKETLEIEPAWKHPMRLDNQRLVDLLGVEPHTPLDQAIAAALTDMGCL-A 335

Query: 181 QAGTQAR 187
           ++ + AR
Sbjct: 336 RSQSHAR 342


>mlr3829 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Mlo
           Mesorhizobium loti
          Length = 318

 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 92/178 (51%), Gaps = 6/178 (3%)

Query: 1   MEQRLQTAATNG-VRSLIVRAGDFFGPHAGNNWFSQGLVKPGKTPASI-IYPGKPGIGHQ 58
           ME+  +  A  G VR++++RAGDFFG     +WF   LV   K    +   PG   + H+
Sbjct: 135 MEELFRREADAGRVRTILLRAGDFFGGTGSGSWFD--LVVAAKMSKGVYTAPGPVDLVHE 192

Query: 59  WTYLPDLAETMSRLLERESSLESFARFHMNGHWDADGTQMTDAIRRVLGNARLPVRGFPW 118
           W YLPD A     L      L S+   +  GH   D  ++  A  + LG   L +   PW
Sbjct: 193 WAYLPDFAVGFVALARNLDRLGSYEALNFPGHAVTD-LEIKAAAEKALGRP-LKMTSMPW 250

Query: 119 WLLGPAAPFVPLFREMKEMRYLWQQPVRMDNVRLLQVLDEEPHTPLDEAVRATLRGLG 176
           W+L   +PFV ++RE+  M YL  +P ++ + RL  ++ E PHTPLD+AV   L  +G
Sbjct: 251 WVLRAGSPFVAMWREIVSMSYLRFEPHQLASTRLEGIIGEIPHTPLDQAVAQALEDIG 308