BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0071.p (246 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC0986 Non COG 159 4e-39 CC2813 Non COG 147 3e-35 AGl3126 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 144 2e-34 YPO1279 [K] COG2186 Transcriptional regulators Ype Yersinia pestis 140 2e-33 ZuxuR [K] COG2186 Transcriptional regulators EcZ Escherichia col... 137 2e-32 >CC0986 Non COG Length = 253 Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 102/218 (46%), Positives = 137/218 (62%), Gaps = 5/218 (2%) Query: 12 SAPETRLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVI 71 +A +LY+ VA+ I IR+ G+RLPSERDLA KVSR +VREA+IALE+ G++ Sbjct: 5 TAETKKLYQQVANAIADAIRDGTHKPGQRLPSERDLAEDFKVSRPTVREAMIALEIRGLV 64 Query: 72 EVRGGSGIYVIE-KKGAAPAIQEIGPGPFEILSARCLIEGEVAAIAARMATDGALDAILR 130 E R GSG+YV + + APA E+ G FE+ AR LIEGEVAA+AA TD L + Sbjct: 65 EARHGSGVYVTDAPRPEAPA-PELDIGAFELTEARRLIEGEVAALAAATITDSELTELAA 123 Query: 131 ALNDMERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQRGR--LWIKMEEHFH 188 +++M + E ADR FH++IA+A+ NSALV+V+ENLWD R + L M E Sbjct: 124 IMDEMVAENDNNVRGERADRRFHVTIAQASRNSALVTVVENLWDLRYKSPLCRAMLERAR 183 Query: 189 TEELRQQTLVDHRRILEAIVDRDPEGARKAMHAHLERV 226 +R + DH+ IL A+ +R+P GAR AM HL RV Sbjct: 184 QVGVR-PLIDDHQEILLALKERNPAGARNAMREHLGRV 220 >CC2813 Non COG Length = 249 Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/216 (43%), Positives = 131/216 (60%), Gaps = 11/216 (5%) Query: 17 RLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEVRGG 76 +LYR +AD + I G+RLP+ER+LA Q VSR ++REA+IALE+ G+IE R G Sbjct: 6 KLYRKIADSVADDIEAGRYRLGDRLPTERELAEQFGVSRPTLREAMIALEMLGMIEARHG 65 Query: 77 SGIYVIEK-KGAAPAIQ-EIGPGPFEILSARCLIEGEVAAIAARMATD---GALDAILRA 131 GIYV + AP+ + + G FE++ AR L EGE AA+AA TD AL+ +L Sbjct: 66 LGIYVTATARPLAPSPEIDFEIGAFELIEARRLFEGEAAALAATSITDEQIAALEGLLTR 125 Query: 132 LNDMERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQRGRLWIKMEEHFHTEE 191 +++ E E+ADR FHL+IARATGN A+++ IE LWD R R + Sbjct: 126 MHEEEEI-----RGEDADREFHLTIARATGNGAIIATIETLWDWRNRSPLARNILARARG 180 Query: 192 L-RQQTLVDHRRILEAIVDRDPEGARKAMHAHLERV 226 + + + +HRR+++A+ RDP AR+AM HLERV Sbjct: 181 MGLEPRIAEHRRVVDALKARDPAAARQAMRDHLERV 216 >AGl3126 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 238 Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 17 RLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEVRGG 76 RLYR+VA++I+ I + G+RLP+ERDLA + VSR +VREALI LE+ G I +R G Sbjct: 9 RLYRLVAEQIRLLIESGELTEGQRLPAERDLAERFGVSRPTVREALIVLEVEGHIHIRMG 68 Query: 77 SGIYVIEKKGAAPAIQEIGP-----GPFEILSARCLIEGEVAAIAARMATDGALDAILRA 131 SG+YV A +E P GPFEIL ARC+IE +A AAR+AT + + Sbjct: 69 SGVYV---NAAGRQAREKPPVPDAHGPFEILQARCIIESAIAEEAARLATPECIAKLDDI 125 Query: 132 LNDMERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQR--GRLWIKMEEHFHT 189 + M P DR FH +IA GNSAL ++D+R + K+ +F Sbjct: 126 IERMAGALDSSPQALNFDRAFHTAIADIIGNSALNRFTGLIYDERSLSPFFEKLASYFEG 185 Query: 190 EELRQQTLVDHRRILEAIVDRDPEGARKAMHAHLERVTTEFSRGWG 235 + +HR I +AI DPEGAR+AM HL FS +G Sbjct: 186 PYTWNLAVQEHRAIRDAIAANDPEGAREAMRQHLTLSQKRFSESFG 231 >YPO1279 [K] COG2186 Transcriptional regulators Ype Yersinia pestis Length = 266 Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/217 (39%), Positives = 122/217 (56%), Gaps = 7/217 (3%) Query: 17 RLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEVRGG 76 RLY+ V +++ I + G+RLP ERD+A VSR+ VREALI LEL ++EVR G Sbjct: 21 RLYQEVGSQLREAIVSGRYSVGDRLPPERDIAENFSVSRSVVREALIMLELEKLVEVRKG 80 Query: 77 SGIYVIEK-----KGAAPAIQEIGPGPFEILSARCLIEGEVAAIAARMATDGALDAILRA 131 SG+YV+ G + + G GPFE+L AR L+E EVAA AA AT + + A Sbjct: 81 SGVYVVNVPTMSLNGESATSIDSGYGPFELLQARQLLESEVAAFAAMQATKADIIKMRNA 140 Query: 132 LNDMERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQRGRLWIKMEEHFHTEE 191 + + +E AD FH +A++T NS L +++ W R + H HT + Sbjct: 141 IEQGKAALTAGAIDESADELFHCLLAQSTQNSVLANMVAQTWQVRKSSAMWQGAHSHTAD 200 Query: 192 L--RQQTLVDHRRILEAIVDRDPEGARKAMHAHLERV 226 R Q L DH++IL+A++ RD + A++AM HLE V Sbjct: 201 FSYRWQWLDDHQKILQAVLRRDSKAAKQAMWQHLENV 237 >ZuxuR [K] COG2186 Transcriptional regulators EcZ Escherichia coli O157:H7 EDL933 Length = 257 Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 125/227 (55%), Gaps = 12/227 (5%) Query: 17 RLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEVRGG 76 R Y+ V I+ I + GERLP ER++A L V+R VREALI LE+ G++EVR G Sbjct: 9 RPYQXVGAXIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRG 68 Query: 77 SGIYVIEKKGA----APAIQEIG-PGPFEILSARCLIEGEVAAIAARMATDGALDAILRA 131 +GIYV++ G+ +P GPFE+L AR L+E +A AA AT + + +A Sbjct: 69 AGIYVLDSSGSHNTDSPDANVCNDAGPFELLQARQLLESNIAEFAALQATREDIVKMRQA 128 Query: 132 LNDMER-FYHDRP-NNEEADRTFHLSIARATGNSALVSVIENLWDQR--GRLWIKMEEHF 187 L ER P ++E D FHL+IA AT NS LV + W R +WI++ H Sbjct: 129 LQLEERELASSAPGSSESGDMQFHLAIAEATHNSMLVELFRQSWQWRENNPMWIQLHSHL 188 Query: 188 HTEELRQQTLVDHRRILEAIVDRDPEGARKAMHAHLERVTT---EFS 231 R++ L DH++IL A++ +D A+ AM HLE V EFS Sbjct: 189 DDSLYRKEWLGDHKQILAALIKKDARAAKLAMWQHLENVKQRLLEFS 235