BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0047.p (254 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM0259 [QR] COG0500 SAM-dependent methyltransferases Sty Salmon... 256 4e-68 Z0233 [QR] COG0500 SAM-dependent methyltransferases EcZ Escheric... 251 1e-66 ECs0206 [QR] COG0500 SAM-dependent methyltransferases Ecs Escher... 251 1e-66 PA3119 [QR] COG0500 SAM-dependent methyltransferases Pae Pseudom... 191 2e-48 yafE [QR] COG0500 SAM-dependent methyltransferases Eco Escherich... 187 2e-47 >STM0259 [QR] COG0500 SAM-dependent methyltransferases Sty Salmonella typhimurium LT2 Length = 256 Score = 256 bits (653), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 128/252 (50%), Positives = 170/252 (67%) Query: 3 SHNEVISEQFGTTAASYLTSAVHAQGADLQDLAAYAAAYPHARVLDLGCGGGHASFATAP 62 SH++ + +QFG+ A +YL SAVHA G DL LA + + HA VLD+GCG GHASF A Sbjct: 5 SHHDNVEKQFGSQANAYLHSAVHAAGRDLARLAQRLSDFSHASVLDMGCGAGHASFVAAQ 64 Query: 63 FAAQVVAYDLSAQMLEVVRAAAVERKLSNIEVQQGSADRLPFADASFDVVCTRFSAHHWR 122 A VVAYDLSA MLEVV AA ER LSNI ++QG A++LPF DASF+VV +R+SAHHW Sbjct: 65 HANSVVAYDLSASMLEVVAGAAEERHLSNITLRQGYAEKLPFEDASFEVVISRYSAHHWH 124 Query: 123 NLPQALQEAARVLKPGGRFVVIDTAAPADVLADTYMQGIELLRDTSHVRNVSLSSWKKLI 182 ++ QAL+E RVLKPGG +++D +P + D ++Q +E LRDTSHVRN S W ++ Sbjct: 125 DVGQALREVNRVLKPGGVLIIMDVMSPGHPVRDIWLQTVEALRDTSHVRNYSSGEWLAMV 184 Query: 183 AQTGLQVEFSKSWKLTLEFASWVARMRTSPEHIVAIKSLWRAAPVEVRAYFNVAEDYSFD 242 L + +L+LEF SWV RMRT + AI+ +APVEV+ YF + +D SF Sbjct: 185 NNAMLVTNTVITDRLSLEFRSWVTRMRTPAPLVEAIRLYQASAPVEVKRYFELQDDGSFS 244 Query: 243 IDTVLVEAIKPI 254 DT+++EA K + Sbjct: 245 SDTIMLEAHKAV 256 >Z0233 [QR] COG0500 SAM-dependent methyltransferases EcZ Escherichia coli O157:H7 EDL933 Length = 256 Score = 251 bits (641), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 130/252 (51%), Positives = 172/252 (68%), Gaps = 2/252 (0%) Query: 2 RSHNEVISEQFGTTAASYLTSAVHAQGADLQDLAAYAAAYPHARVLDLGCGGGHASFATA 61 +SH++ + +QF + A+ YLTS VHA G DLQ LA A YP A VLD+GCG GHASF A Sbjct: 4 QSHHDHVEKQFSSQASEYLTSTVHASGRDLQLLAVCLADYPDASVLDMGCGAGHASFVAA 63 Query: 62 PFAAQVVAYDLSAQMLEVVRAAAVERKLSNIEVQQGSADRLPFADASFDVVCTRFSAHHW 121 + VVAYDLSAQML+VV AA R+L NI +QG A+ LPFAD +FD+V +R+SAHHW Sbjct: 64 QNVSTVVAYDLSAQMLDVVAQAAEVRQLKNITTRQGYAESLPFADNAFDIVISRYSAHHW 123 Query: 122 RNLPQALQEAARVLKPGGRFVVIDTAAPADVLADTYMQGIELLRDTSHVRNVSLSSWKKL 181 ++ AL+E R+LKPGGR +V+D +P + D ++Q +E L DTSHVRN + W +L Sbjct: 124 HDVGAALREVNRILKPGGRLIVMDVMSPGHPVRDIWLQTVEALCDTSHVRNYASGEWLRL 183 Query: 182 IAQTGLQVEFSKSWKLTLEFASWVARMRTSPEHIV-AIKSLWRAAPVEVRAYFNVAEDYS 240 I + L V+ + KL LEF+SWVARMRT PE +V AI+ ++A EVR YF + D S Sbjct: 184 INEANLIVDNLITDKLPLEFSSWVARMRT-PEALVDAIRIYQQSASTEVRTYFALQNDGS 242 Query: 241 FDIDTVLVEAIK 252 F D ++V+A K Sbjct: 243 FTSDIIMVDAHK 254 >ECs0206 [QR] COG0500 SAM-dependent methyltransferases Ecs Escherichia coli O157:H7 Length = 256 Score = 251 bits (641), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 130/252 (51%), Positives = 172/252 (68%), Gaps = 2/252 (0%) Query: 2 RSHNEVISEQFGTTAASYLTSAVHAQGADLQDLAAYAAAYPHARVLDLGCGGGHASFATA 61 +SH++ + +QF + A+ YLTS VHA G DLQ LA A YP A VLD+GCG GHASF A Sbjct: 4 QSHHDHVEKQFSSQASEYLTSTVHASGRDLQLLAVCLADYPDASVLDMGCGAGHASFVAA 63 Query: 62 PFAAQVVAYDLSAQMLEVVRAAAVERKLSNIEVQQGSADRLPFADASFDVVCTRFSAHHW 121 + VVAYDLSAQML+VV AA R+L NI +QG A+ LPFAD +FD+V +R+SAHHW Sbjct: 64 QNVSTVVAYDLSAQMLDVVAQAAEVRQLKNITTRQGYAESLPFADNAFDIVISRYSAHHW 123 Query: 122 RNLPQALQEAARVLKPGGRFVVIDTAAPADVLADTYMQGIELLRDTSHVRNVSLSSWKKL 181 ++ AL+E R+LKPGGR +V+D +P + D ++Q +E L DTSHVRN + W +L Sbjct: 124 HDVGAALREVNRILKPGGRLIVMDVMSPGHPVRDIWLQTVEALCDTSHVRNYASGEWLRL 183 Query: 182 IAQTGLQVEFSKSWKLTLEFASWVARMRTSPEHIV-AIKSLWRAAPVEVRAYFNVAEDYS 240 I + L V+ + KL LEF+SWVARMRT PE +V AI+ ++A EVR YF + D S Sbjct: 184 INEANLIVDNLITDKLPLEFSSWVARMRT-PEALVDAIRIYQQSASTEVRTYFALQNDGS 242 Query: 241 FDIDTVLVEAIK 252 F D ++V+A K Sbjct: 243 FTSDIIMVDAHK 254 >PA3119 [QR] COG0500 SAM-dependent methyltransferases Pae Pseudomonas aeruginosa Length = 187 Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/182 (52%), Positives = 123/182 (67%) Query: 67 VVAYDLSAQMLEVVRAAAVERKLSNIEVQQGSADRLPFADASFDVVCTRFSAHHWRNLPQ 126 +VAYDLSA+ML VV +A ER ++NI +QG A+ LPFAD FD V +R+S HHWR++ Sbjct: 1 MVAYDLSAEMLAVVAQSAAERGMANIRTEQGKAESLPFADGEFDFVFSRYSTHHWRDVGL 60 Query: 127 ALQEAARVLKPGGRFVVIDTAAPADVLADTYMQGIELLRDTSHVRNVSLSSWKKLIAQTG 186 AL+E RVLKPGG + +D AAP L DT++Q +ELLRDTSHVRN S + W +L + G Sbjct: 61 ALREVRRVLKPGGVAIFVDVAAPGQALPDTFLQTVELLRDTSHVRNYSPAEWARLSGEAG 120 Query: 187 LQVEFSKSWKLTLEFASWVARMRTSPEHIVAIKSLWRAAPVEVRAYFNVAEDYSFDIDTV 246 L V S+ +L LEF SWV RMRT AI+SL A EVR YF +A+D SF D + Sbjct: 121 LLVTGSRRQRLRLEFQSWVERMRTPEVFRQAIRSLQLAVGEEVREYFEIADDGSFSTDVL 180 Query: 247 LV 248 ++ Sbjct: 181 VL 182 >yafE [QR] COG0500 SAM-dependent methyltransferases Eco Escherichia coli K12 Length = 207 Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 96/203 (47%), Positives = 130/203 (64%) Query: 50 GCGGGHASFATAPFAAQVVAYDLSAQMLEVVRAAAVERKLSNIEVQQGSADRLPFADASF 109 G G +F A + VVAYDLSA ML+VV AA R+L NI +QG A+ LPFAD +F Sbjct: 3 GLPQGRPTFGAAQNVSAVVAYDLSAHMLDVVAQAAEARQLKNITTRQGYAESLPFADNAF 62 Query: 110 DVVCTRFSAHHWRNLPQALQEAARVLKPGGRFVVIDTAAPADVLADTYMQGIELLRDTSH 169 D+V +R+SAHHW ++ AL+E R+LKPGGR +V+D +P + D ++Q +E LRDTSH Sbjct: 63 DIVISRYSAHHWHDVGAALREVNRILKPGGRLIVMDVMSPGHPVRDIWLQTVEALRDTSH 122 Query: 170 VRNVSLSSWKKLIAQTGLQVEFSKSWKLTLEFASWVARMRTSPEHIVAIKSLWRAAPVEV 229 VRN + W LI + L V+ + KL LEF+SWVARMRT + AI+ ++A EV Sbjct: 123 VRNYASGEWLTLINEANLIVDNLITDKLPLEFSSWVARMRTPEALVDAIRIYQQSASTEV 182 Query: 230 RAYFNVAEDYSFDIDTVLVEAIK 252 R YF + D F D ++V+A K Sbjct: 183 RTYFALQNDGFFTSDIIMVDAHK 205