BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0039.p         (294 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1255 Non COG                                                       229   6e-60

>RSc1255 Non COG
          Length = 285

 Score =  229 bits (584), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 122/269 (45%), Positives = 175/269 (65%), Gaps = 1/269 (0%)

Query: 24  SFGRALLSQLHIRMLLLTVLPFVMSIVLWGVALWLGLQPMIDWLQDYFVGHNGFGVAGSI 83
           SFGRALLSQLH RML +TVLPF++++++WG  L+ G  P+++  +    G        S 
Sbjct: 7   SFGRALLSQLHPRMLFMTVLPFIVALLVWGPILYFGWNPVMEVARGMLEGLPLTHWIYSG 66

Query: 84  LSWFNMGALKTVIVPLIAMWALLPLMILTALVFVGLWAVPAIARHVGGRHYAHLEQRHGG 143
           +    M   + V+ PL+ +  L+P+++++ LVFVG  +VPA+ R +  R Y  LE+R GG
Sbjct: 67  MDSLGMTGFRAVLTPLVVIAVLVPVIVVSILVFVGAASVPAVMRFLD-RSYPLLERRQGG 125

Query: 144 SVAGSLWTSLWCFAVFVFGWIVTLPLSIFPPLAFVIHPLLWGWLTYRVMAYDTLADYATP 203
           SV GS+  SL C  VF    +VTLPL + PP   +I PLLWGWLTYRVM YD L+++A+ 
Sbjct: 126 SVFGSVMHSLGCTLVFAVVAVVTLPLWLIPPFFALIPPLLWGWLTYRVMTYDALSEHASA 185

Query: 204 EERRAILHAHRWPLLLVGAIAGTMGAAPTLLWLGGALSVIFFPILAAGAIWLYVLVFVFT 263
           +ERR I+  +R PLL +G   G +G+APTLLW+   ++++ FPI+A   IWLYVL+F+F+
Sbjct: 186 DERRIIMQRYRLPLLGIGVAVGMLGSAPTLLWVSSVVTIVLFPIIAIAVIWLYVLIFIFS 245

Query: 264 GLWFQYYCLEALSSLRAAASADTVSASSA 292
            LWF ++CL AL+ LR  A   T    S 
Sbjct: 246 ALWFGHFCLRALTRLRGEAPPPTRVIEST 274