BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0026.p         (103 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1114 [C] COG1146 Ferredoxin Rso Ralstonia solanacearum             174   6e-44
PA3621 [C] COG1146 Ferredoxin Pae Pseudomonas aeruginosa              142   2e-34
XF2601 [C] COG1146 Ferredoxin Xfa Xylella fastidiosa 9a5c             137   5e-33
RSp0807 [C] COG1146 Ferredoxin Rso Ralstonia solanacearum             137   6e-33
VC0804 [C] COG1146 Ferredoxin Vch Vibrio cholerae                     123   8e-29

>RSc1114 [C] COG1146 Ferredoxin Rso Ralstonia solanacearum
          Length = 108

 Score =  174 bits (440), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 97/104 (93%), Gaps = 1/104 (0%)

Query: 1   VTDSCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPAD 60
           VT+SCIRC+YTDCVDVCPVDCFREGPNFL IDPDECIDCAVCVAECPVNAIYAEEDVPAD
Sbjct: 5   VTESCIRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEEDVPAD 64

Query: 61  QQEFIKLNEQLAR-FWPSITKTKAPLAEAEEWKDVKNKLEFLQR 103
           QQ++I +N +LA+  WPSITKTK+PL +AEEWKDVK+K ++L+R
Sbjct: 65  QQKWIAINAELAQAGWPSITKTKSPLPDAEEWKDVKDKEQYLER 108


>PA3621 [C] COG1146 Ferredoxin Pae Pseudomonas aeruginosa
          Length = 107

 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 82/103 (79%)

Query: 1   VTDSCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPAD 60
           VTD+CI+C+YTDCV+VCPVDCF EGPNFL I PDECIDCA+C  ECP  AI++E++VP +
Sbjct: 5   VTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVPEN 64

Query: 61  QQEFIKLNEQLARFWPSITKTKAPLAEAEEWKDVKNKLEFLQR 103
            QEFI+LN +LA  WP+IT+ K  L +AEEW  V  KL+ L+R
Sbjct: 65  MQEFIELNSELAEVWPNITEKKDALPDAEEWDGVAGKLQHLER 107


>XF2601 [C] COG1146 Ferredoxin Xfa Xylella fastidiosa 9a5c
          Length = 107

 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 78/103 (75%)

Query: 1   VTDSCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPAD 60
           VT++CI C+YTDCV+VCPVDCF EGPNFL IDPDECIDC +C  ECP NAIY EEDVP +
Sbjct: 5   VTENCINCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIYPEEDVPTE 64

Query: 61  QQEFIKLNEQLARFWPSITKTKAPLAEAEEWKDVKNKLEFLQR 103
           Q++ I LN +LA+ WP +T  + P+ +A EW    +KL  LQR
Sbjct: 65  QKQCIALNAELAKAWPVVTVRREPMPDAAEWDGKPDKLALLQR 107


>RSp0807 [C] COG1146 Ferredoxin Rso Ralstonia solanacearum
          Length = 112

 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   VTDSCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPAD 60
           VT+SCI+C+YTDCV VCP+DCF  GPNFL IDPD CIDC++C  ECPV AI+AE DVPAD
Sbjct: 5   VTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDTCIDCSICAPECPVGAIHAEADVPAD 64

Query: 61  QQEFIKLNEQLARF--WPSITKTKAPLAEAEEWKDVKNKLEFL 101
           Q+EFI LN QL+R   WP +T+ + PLA+   W  VK+K + L
Sbjct: 65  QREFIALNAQLSRRADWPRLTQVQPPLADHARWAQVKDKRDAL 107


>VC0804 [C] COG1146 Ferredoxin Vch Vibrio cholerae
          Length = 107

 Score =  123 bits (309), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 76/103 (73%)

Query: 1   VTDSCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPAD 60
           VTD+CI+C+YTDCV VCP D F EGPNF+ I+P ECIDC +CV EC   AI+ E+++  D
Sbjct: 5   VTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECTAQAIFQEDELVGD 64

Query: 61  QQEFIKLNEQLARFWPSITKTKAPLAEAEEWKDVKNKLEFLQR 103
           Q+ FI+LN +LA  WP++T+ K  + +A +W  V NKL+ L++
Sbjct: 65  QRIFIELNAELAEHWPNLTEVKPAMEDAAKWDGVPNKLDMLEK 107