BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0021.p (226 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO2239 [L] COG0177 Predicted EndoIII-related endonuclease Ype Y... 301 8e-82 PA3495 [L] COG0177 Predicted EndoIII-related endonuclease Pae Ps... 300 3e-81 nth [L] COG0177 Predicted EndoIII-related endonuclease Eco Esche... 298 5e-81 RSc1005 [L] COG0177 Predicted EndoIII-related endonuclease Rso R... 298 7e-81 STM1453 [L] COG0177 Predicted EndoIII-related endonuclease Sty S... 298 7e-81 >YPO2239 [L] COG0177 Predicted EndoIII-related endonuclease Ype Yersinia pestis Length = 213 Score = 301 bits (771), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 148/192 (77%), Positives = 161/192 (83%) Query: 1 MNSEKRREIFSRLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MN EKR I +RLR NP PTTEL Y+TPFELLI+VLLSAQATDVSVNKAT +LYPVANT Sbjct: 1 MNKEKRVTILTRLRDNNPHPTTELVYSTPFELLISVLLSAQATDVSVNKATARLYPVANT 60 Query: 61 PAAIYKLGVDELIPYIQTIGLFRTKAKNVIETCRILLEQHGGEVPETREELEALPGVGRK 120 P AI LGVD L YI+TIGL+ TKA+NVI+TCRILLE+H GEVPE R LEALPGVGRK Sbjct: 61 PQAILDLGVDGLKEYIKTIGLYNTKAENVIKTCRILLEKHQGEVPEDRAALEALPGVGRK 120 Query: 121 TANVVMNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLMKFVAPEFLQDAHHWLI 180 TANVV+NTAFG PTIAVDTHIFRV NRTG APG +VD+VE KL+K V EF D HHWLI Sbjct: 121 TANVVLNTAFGWPTIAVDTHIFRVCNRTGFAPGSNVDQVEEKLLKVVPAEFKLDCHHWLI 180 Query: 181 LHGRYTCIARKP 192 LHGRYTCIARKP Sbjct: 181 LHGRYTCIARKP 192 >PA3495 [L] COG0177 Predicted EndoIII-related endonuclease Pae Pseudomonas aeruginosa Length = 212 Score = 300 bits (767), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 144/193 (74%), Positives = 165/193 (85%) Query: 1 MNSEKRREIFSRLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MN+ KR EIF RL + NP P TEL YTTPFELLIAV+LSAQATDV VNKAT +LYPVANT Sbjct: 1 MNAAKRAEIFRRLHEDNPEPRTELAYTTPFELLIAVILSAQATDVGVNKATARLYPVANT 60 Query: 61 PAAIYKLGVDELIPYIQTIGLFRTKAKNVIETCRILLEQHGGEVPETREELEALPGVGRK 120 P AI+ LGV+ L YI+TIGL+ +KAKNVIETCRIL+E+HGG+VP+ RE+LEALPGVGRK Sbjct: 61 PEAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRILIEKHGGQVPDNREDLEALPGVGRK 120 Query: 121 TANVVMNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLMKFVAPEFLQDAHHWLI 180 TANVV+NTAF +AVDTHIFRV+NRTGIAPGK+V EVE+KL+KFV E+L DAHHWLI Sbjct: 121 TANVVLNTAFRQLAMAVDTHIFRVANRTGIAPGKNVLEVEKKLLKFVPREYLLDAHHWLI 180 Query: 181 LHGRYTCIARKPH 193 LHGRY C ARKP Sbjct: 181 LHGRYVCKARKPQ 193 >nth [L] COG0177 Predicted EndoIII-related endonuclease Eco Escherichia coli K12 Length = 211 Score = 298 bits (764), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 144/192 (75%), Positives = 164/192 (85%) Query: 1 MNSEKRREIFSRLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MN KR EI +RLR+ NP PTTEL +++PFELLIAVLLSAQATDVSVNKAT KLYPVANT Sbjct: 1 MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANT 60 Query: 61 PAAIYKLGVDELIPYIQTIGLFRTKAKNVIETCRILLEQHGGEVPETREELEALPGVGRK 120 PAA+ +LGV+ + YI+TIGL+ +KA+N+I+TCRILLEQH GEVPE R LEALPGVGRK Sbjct: 61 PAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRK 120 Query: 121 TANVVMNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLMKFVAPEFLQDAHHWLI 180 TANVV+NTAFG PTIAVDTHIFRV NRT APGK+V++VE KL+K V EF D HHWLI Sbjct: 121 TANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLI 180 Query: 181 LHGRYTCIARKP 192 LHGRYTCIARKP Sbjct: 181 LHGRYTCIARKP 192 >RSc1005 [L] COG0177 Predicted EndoIII-related endonuclease Rso Ralstonia solanacearum Length = 214 Score = 298 bits (762), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 147/205 (71%), Positives = 167/205 (81%), Gaps = 3/205 (1%) Query: 1 MNSEKRREIFSRLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MN KRR +F LR+ NPTPTTELEYTTPFELLIAVLLSAQATDV VNKATRKL+PVA+T Sbjct: 1 MNPAKRRALFETLREHNPTPTTELEYTTPFELLIAVLLSAQATDVGVNKATRKLFPVADT 60 Query: 61 PAAIYKLGVDELIPYIQTIGLFRTKAKNVIETCRILLEQHGGEVPETREELEALPGVGRK 120 PA + LG + L YI+TIGL+RTK K++++TCRILL+Q+GG+VP R LEALPGVGRK Sbjct: 61 PAKMLALGEEGLTAYIKTIGLYRTKCKHILQTCRILLDQYGGQVPRDRAALEALPGVGRK 120 Query: 121 TANVVMNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLMKFVAPEFLQDAHHWLI 180 TANVV+NTAFG PTIAVDTHIFRV+NRTG+APGK+V EVE KL+K V EF QDAHHWLI Sbjct: 121 TANVVLNTAFGEPTIAVDTHIFRVANRTGLAPGKNVLEVELKLLKVVPEEFRQDAHHWLI 180 Query: 181 LHGRYTCIARKP---HXVFPPFSPF 202 LHGRY C ARKP H P F Sbjct: 181 LHGRYVCRARKPECWHCAIEPLCEF 205 >STM1453 [L] COG0177 Predicted EndoIII-related endonuclease Sty Salmonella typhimurium LT2 Length = 211 Score = 298 bits (762), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 145/192 (75%), Positives = 163/192 (84%) Query: 1 MNSEKRREIFSRLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MN KR EI +RLR NP PTTEL +T+PFELLIAVLLSAQATDVSVNKAT KLYPVANT Sbjct: 1 MNKAKRLEILTRLRDNNPHPTTELNFTSPFELLIAVLLSAQATDVSVNKATAKLYPVANT 60 Query: 61 PAAIYKLGVDELIPYIQTIGLFRTKAKNVIETCRILLEQHGGEVPETREELEALPGVGRK 120 PAA+ +LGV+ + YI+TIGLF +KA+NVI+TCRILL++H GEVPE R LEALPGVGRK Sbjct: 61 PAAMLELGVEGVKSYIKTIGLFNSKAENVIKTCRILLDKHNGEVPEDRAALEALPGVGRK 120 Query: 121 TANVVMNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLMKFVAPEFLQDAHHWLI 180 TANVV+NTAFG PTIAVDTHIFRV NRT APGK+V++VE KL+K V EF D HHWLI Sbjct: 121 TANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPNEFKVDCHHWLI 180 Query: 181 LHGRYTCIARKP 192 LHGRYTCIARKP Sbjct: 181 LHGRYTCIARKP 192