BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0020.p (407 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1592 [E] COG0683 ABC-type branched-chain amino acid transport... 255 1e-67 RSc2441 [E] COG0683 ABC-type branched-chain amino acid transport... 248 2e-65 RSc3300 [E] COG0683 ABC-type branched-chain amino acid transport... 229 7e-60 SMc01946 [E] COG0683 ABC-type branched-chain amino acid transpor... 155 1e-37 DR1038 [E] COG0683 ABC-type branched-chain amino acid transport ... 152 2e-36 >RSp1592 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 380 Score = 255 bits (651), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 132/344 (38%), Positives = 208/344 (60%), Gaps = 2/344 (0%) Query: 51 SRTVLIGYAGPLSGTSAAVGKSMANAAQLAVDEANKRGLQIQGRPVQLKLLIQDDRTNPR 110 +TV IG AGPL+G +A GK N A+LAV++ N++GL I G+ V+ +LL +DD+ +PR Sbjct: 29 EQTVRIGNAGPLTGGAAHWGKDNENGARLAVEDLNRKGLVIGGKKVRFELLSEDDQADPR 88 Query: 111 TAELIARYLVRSGVVGVIGHWNSGASLAAAPIYNAGGVIQISPASMSNLFTQQGNRAAFR 170 A ++A LV SGV ++GH+NSGA++ A+ IY G+ IS A+ L TQQG R FR Sbjct: 89 QAMVVANKLVDSGVKAMLGHFNSGAAIPASAIYARAGIPDISVATNPQL-TQQGFRNTFR 147 Query: 171 TIGNNDSAGSYTADYAVKTLQARRFLVVDDGTPFGRGFVEQFSRSAKELGAQIVGSHSVS 230 I ++D G+ + +AV TL A++ ++DD T +G+G E F + K LGA +V S Sbjct: 148 IIASDDDVGAALSRFAVTTLNAKKVAIIDDRTAYGQGAAEVFEKGVKGLGASVVSQQFTS 207 Query: 231 DKTSDFNAVLIDALRLRPDAVMFGGLELQASTLARSLKRRSPGIRFIGSSGTVGLPFLRA 290 DK +DF A+L R RPD + +GG++ Q +AR +K+ G + +G+ G + Sbjct: 208 DKATDFMAILTSIKRTRPDVIFYGGMDAQGGLIARQMKQLGIGAKLLGTDGLCTGAVAKI 267 Query: 291 AGADGNGSV-VLEPGLPMDKMPGWKNFEKNYMQKFDSNIELFAPFAYDATQVLIAAMRQA 349 + NG++ G +D MP +F + Y +F + + +AP+ YD+ V+ AAM+ A Sbjct: 268 SAGAVNGTLYCTRGGKALDMMPNGSDFARRYKARFGTEVLNYAPYLYDSLMVIAAAMQAA 327 Query: 350 NSMEPKKIAEALHAIHFSGMTGPVSFNQQGDLNNPTFTIYEVEN 393 +S+EP + AL I G TGPV+F+++G+L P FT++ ++ Sbjct: 328 DSVEPPRYLPALAKISLDGTTGPVAFDEKGNLKTPGFTVFTYQD 371 >RSc2441 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 336 Score = 248 bits (633), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 115/334 (34%), Positives = 196/334 (58%) Query: 69 VGKSMANAAQLAVDEANKRGLQIQGRPVQLKLLIQDDRTNPRTAELIARYLVRSGVVGVI 128 +GK N A+LAV++ NK GL I G+ ++L+L+ +DD +P+T +A+ LV VV V+ Sbjct: 1 MGKDNENGARLAVEDVNKEGLTIDGKKIKLELVGEDDAADPKTGTAVAQKLVDEKVVAVV 60 Query: 129 GHWNSGASLAAAPIYNAGGVIQISPASMSNLFTQQGNRAAFRTIGNNDSAGSYTADYAVK 188 GH NSG S+ A+ IY+ G++QISP+S + +T+QG + +R + + G A+YA K Sbjct: 61 GHLNSGVSIPASKIYSDAGIVQISPSSTNPDYTKQGFKTTYRVVATDAQQGPALANYAAK 120 Query: 189 TLQARRFLVVDDGTPFGRGFVEQFSRSAKELGAQIVGSHSVSDKTSDFNAVLIDALRLRP 248 TL A+ +VDD T +G+G ++F ++AK G +V + +DK +DF A+L +P Sbjct: 121 TLGAKSVAIVDDATAYGKGLADEFEKTAKADGVNVVAREATNDKATDFKAILTKIKGKKP 180 Query: 249 DAVMFGGLELQASTLARSLKRRSPGIRFIGSSGTVGLPFLRAAGADGNGSVVLEPGLPMD 308 D +M+GG++ A+ K + +G G AG + + E GL + Sbjct: 181 DVIMYGGMDATGGPFAKQAKELGITAKIVGGDGVCTDKVAELAGDAIDNIICSEAGLALS 240 Query: 309 KMPGWKNFEKNYMQKFDSNIELFAPFAYDATQVLIAAMRQANSMEPKKIAEALHAIHFSG 368 KM +FEK Y +F + ++++APF YDA V++ AM+++NS++P KI A+ ++ G Sbjct: 241 KMEKGADFEKKYEDRFKTPVQIYAPFTYDAVMVVVDAMKRSNSVDPAKILAAMPTTNYHG 300 Query: 369 MTGPVSFNQQGDLNNPTFTIYEVENQSWVVKKVI 402 + G ++F+ +GDL + T+Y +++ V V+ Sbjct: 301 VIGNIAFDDKGDLKEGSITLYNYKDKKKTVLDVV 334 >RSc3300 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 377 Score = 229 bits (585), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 210/369 (56%), Gaps = 11/369 (2%) Query: 40 IGTNASPEDDGSRTVLIGYAGPLSGTSAAVGKSMANAAQLAVDEANKRGLQIQGRPVQLK 99 +G+ AS ++ + +G+A P++G A GK M N LA++E N +I G+ V+ + Sbjct: 15 LGSAASAQE----VIKLGFAAPMTGAQAQYGKDMQNGVTLAIEEFNATKPKIAGKDVKFQ 70 Query: 100 LLIQDDRTNPRTAELIARYLVRSGVVGVIGHWNSGASLAAAPIYNAGGVIQISPASMSNL 159 L+ +DD+ +P+T +A+ LV G+ G++GH+NSG S+ A+ +YN G+ QI+ A+ Sbjct: 71 LVSEDDQADPKTGTTVAQKLVDGGIKGMVGHFNSGTSIPASRVYNQAGIAQIAMATAPE- 129 Query: 160 FTQQGNRAAFRTIGNNDSAGSYTADYAVKTLQARRFLVVDDGTPFGRGFVEQFSRSAKEL 219 +T+QG + FR + ++ GS +AVK L + +VDD T +G+G ++F ++AK Sbjct: 130 YTKQGYKTTFRMMTSDTQQGSVVGTFAVKKLGYKNLAIVDDRTAYGQGLADEFEKAAKAA 189 Query: 220 GAQIVGSHSVSDKTSDFNAVLIDALRLRPDAVMFGGLELQASTLARSLKRRSPGIRFIGS 279 GA IV +DK SDF A+L PDAV +GG E Q++ L + + R G++ Sbjct: 190 GATIVRREYTNDKASDFKAILTQIKSKNPDAVFYGGAEGQSAPLVKQM--RELGMKATLM 247 Query: 280 SGTVGLP--FLRAAGADGNGSVVLE-PGLPMDKMPGWKNFEKNYMQKFDSNIELFAPFAY 336 SG + F++ AGA VV GLP+++MPG +++ Y ++F S ++ ++P+AY Sbjct: 248 SGEMSKTDDFIKLAGAPAAEGVVCSLAGLPLEQMPGGAGYKQRYEKRFGSTVQTYSPYAY 307 Query: 337 DATQVLIAAMRQANSMEPKKIAEALHAIHFSGMTGP-VSFNQQGDLNNPTFTIYEVENQS 395 D L+ AM A S +P K L A + G+T +++ +GDL + T+Y+V Sbjct: 308 DGAMALMKAMVAAGSSDPSKYLPILAATNAQGVTAKHYAYDDKGDLKDGGITVYKVTGGK 367 Query: 396 WVVKKVISG 404 WV + + G Sbjct: 368 WVPLESVGG 376 >SMc01946 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 372 Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/338 (29%), Positives = 171/338 (50%), Gaps = 8/338 (2%) Query: 54 VLIGYAGPLSGTSAAVGKSMANAAQLAVDEANKRGLQIQGRPVQLKLLIQDDRTNPRTAE 113 +L+G GPL+G +AA G + A+ A ++ N G I G Q+K+++ DD ++P+ Sbjct: 25 ILVGVGGPLTGPNAAFGAQLQKGAEQAAEDINAAG-GINGE--QIKVVLGDDVSDPKQGV 81 Query: 114 LIARYLVRSGVVGVIGHWNSGASLAAAPIYNAGGVIQISPASMSNLFTQQGNRAAFRTIG 173 +A+ V GV V+GH+NSG S+ A+ IY G++Q++PAS + FT++G FRT G Sbjct: 82 SVAQKFVADGVKFVVGHFNSGVSIPASEIYAENGILQVTPASTNPQFTERGLWNTFRTCG 141 Query: 174 NNDSAGSYTADYAVKTLQARRFLVVDDGTPFGRGFVEQFSRSAKELGAQIVGSHSVSDKT 233 +D G+ Y + + V+ D TP+G+G ++ +S E G ++ Sbjct: 142 RDDQQGAVAGAYIAANFKDAKVAVIHDKTPYGQGLADETKKSMNEAGVTEALYEGINTGD 201 Query: 234 SDFNAVLIDALRLRPDAVMFGGLELQASTLARSLKRRSPGIRFIGSSGTVGLPFLRAAGA 293 DF+A++ + V +GGL +A + R +K + + G V AG Sbjct: 202 KDFSALIAKMKQAGVSIVYYGGLHTEAGLIMRQMKDQGLKATMMSGDGIVSNELASIAGD 261 Query: 294 DGNGSVVLEPGLPMDKMPGWKNF-EKNYMQKFDSNIELFAPFAYDATQVLIAAMRQANSM 352 +G+++ P K P K+ EK F+ E + +AY A QV+ + A + Sbjct: 262 AVDGTLMTFAPDPR-KSPAAKDLVEKFRAAGFEP--EAYTLYAYAALQVIAEGAKAAGNT 318 Query: 353 EPKKIAEALHAIH-FSGMTGPVSFNQQGDLNNPTFTIY 389 +P+ +AEA+ A F G + F+++GD+ P + +Y Sbjct: 319 DPQAVAEAIKAKGPFKTAIGELGFDEKGDITRPDYVMY 356 >DR1038 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Dra Deinococcus radiodurans Length = 393 Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/350 (28%), Positives = 172/350 (49%), Gaps = 12/350 (3%) Query: 53 TVLIGYAGPLSGTSAAVGKSMANAAQLAVDEANKRGLQIQGRPVQLKLLIQDDRTNPRTA 112 TV I PLSG+S+ +G + N AQLAV+E ++ + L L+ DD+ +P T Sbjct: 33 TVKIATISPLSGSSSNLGLQIKNGAQLAVNEYKAEFAKLG---MNLSLVAYDDQADPATG 89 Query: 113 ELIARYLV-RSGVVGVIGHWNSGASLAAAPIYNAGGVIQISPASMSNLFTQQGNRAAFRT 171 AR +V V+ V+G N+G ++ A+ + V +SPA+ T +G + R Sbjct: 90 TAAARRVVADKNVLAVVGTLNTGVAIPASQALSTSKVAMVSPANTGTKVTDRGLKNMNRI 149 Query: 172 IGNNDSAGSYTADYAVKTLQARRFLVVDDGTPFGRGFVEQFSRSAKELGAQIVGSHSVSD 231 +D+ G AD+ V TL+ ++ V++D TP+G G + + K G QIV S V+ Sbjct: 150 CARDDAQGPAGADFMVSTLKVKKVYVINDKTPYGEGLSGEAEKRLKAKGVQIVQSEGVAA 209 Query: 232 KTSDFNAVLIDALRLRPDAVMFGGLELQASTLARSLKRRSPGIRFIGSSGTVGLPFLRAA 291 + DF A++ L+PDA+ FGGL Q A+ L+ + + IG G + A Sbjct: 210 EERDFTAIITKIQTLKPDAIYFGGLYGQIGPFAQQLRAKGVQVPLIGGDGMDSDELAKLA 269 Query: 292 GADGNGSVVLEP-GLPMDKMPGWKNFEKNYMQKFDSNIELFAPFAYDATQVLI-----AA 345 GA G ++ P+D +P K N+ + F S+++ + YD+ +V++ AA Sbjct: 270 GAQGANNIYFTTVAPPLDSVPAAKTMAGNFKKAFGSDVQGYGIMGYDSAKVVLQGILDAA 329 Query: 346 MRQANSMEPK-KIAEALHAIHFSG-MTGPVSFNQQGDLNNPTFTIYEVEN 393 + N + ++ A+ + F +TG V F++ GD + ++N Sbjct: 330 KKNGNKAPSRAQVETAIRSGTFGNLLTGTVQFDKNGDRKAGKMYVIAIKN 379